Gene detail

Gene detail information of Glyur000593s00016422.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G42520.1	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	XP_004514158.1	0	PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Cicer arietinum]
COG	NP_355291.1	2.00E-95	ATP-dependent RNA helicase [Agrobacterium fabrum str. C58]
Swissprot	tr\|Q84W89\|RH37_ARATH	0	DEAD-box ATP-dependent RNA helicase 37
trEMBL	tr\|A0A072VUJ1\|A0A072VUJ1_MEDTR	0	DEAD-box ATP-dependent RNA helicase-like protein {ECO:0000313\|EMBL:KEH41770.1}

Sequence

Transcript Sequence

>Glyur000593s00016422.1
CACACGCAAGCTCGTTTTTCGCCGGTGGGATTCAATTTAGATATTTATCTCTTTTCACCGCAAATTTATGCGTGTTTGGTAGCGACGAAGGAAAAAAAAACACAACAAAAGAGAGAAAAAAGGAAGAAACANTTTTGATTCAACTCGGAAAAACGCTGAGAAAAAGAAAAAATCTCCATTCCCTTTGACAACAACTCAATCGAAGCTCTCCCTCAATCTCATCCGATTCGCTCATTGTTTTCGAAAATCGCCTATTCACTTGACAATTCGTTGTTTTGCTTTGCATTTTGGATTTCAATTTCAAGTTTGACATTTGAGCTTAGCTGGTCGTGATTGTATTGTATGATAAAGCAAGCACACGCATAAGAGGAGAGGATCGTTGATTGTGAAGCGTAGCTTTTGTGTTTGTTGAGCATTTGGTGGTGGTTATTATCACATTCACAACAAAGGTGACAATAATGTCTGCAACTATNAGAGCTGCGTGGGGAGATTCTGCTGACAATTCTTCTTCCAATACCAATGCCTCGTCACGCCCTCTCAGGCCAGCATATGTTCCTCCACATCTTAGGAACCAACCAATGACTTCGGAGCCTCCTTCTTTGGTGGCCAACAACAATGAGAGGGTTAATAATTGGGGTGGAAGTTCCTCTATCTCTAAGCCTGATCTTGGCCGGCAGCAGCAAGGATATGGATACGGTTCCGGCGGTGGTGGCTGGAACANTAGTAGAGTGGGAGGGAGGGACCACCGTGGTGGGAGGCGCGAGGCAAATCCTTTTGAGAATGATGAAGCTGAAGAAGATCAATCTTTTAGTGAGGCAGAGAACACGGGGATTAACTTTGATGCTTATGATGATATCCCTGTGGAGACTAGTGGGGACAATGTGCCCCCACCTGTGAATACGTTTGCAGAGATAGATTTGGGTGAGGCATTGAATCAGAACATACAGAGATGCAAGTATGTCAAACCAACCCCGGTTCAGAGGTATGCTATACCGATCTCTCTTGCGGGGAGAGATTTGATGGCTTGTGCTCAGACAGGGTCGGGAAAGACAGCTGCTTTTTGCTTTCCTATCATAAGTGGAATCCTCAGGGAGCAGTATGTTCAGAGACCGCGCGTGGCTCGAACTGCTTTTCCTCTCGCGCTTATCCTCTCCCCTACCAGGGAGCTTTCATGCCAGATACATGATGAGGCCAGAAAGTTTTCTTATCAAACTGGTGTCAAGGTGGTAGTTGCTTATGGAGGAGCACCAATCACNCAACAGTTGCGGGAGCTTGAGAGAGGAGTTGATATTCTGGTGGCTACTCCAGGGCGTTTGGTAGATTTGCTTGAAAGGGCTAGGGTGTCATTGCAGATGACAAGATATTTGGCTCTTGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAGATAGTCGAACAAATGGACATGCCTCCTCCTGGCATGAGACAGACACTTCTGTTTAGTGCCACATTTCCCAAAGAGATACAGAGACTTGCGTCAGATTTTCTTTCAAATTATGTGTTTCTGGCTGTTGGAAGGGTTGGTTCAAGTACTGATCTAATTGCTCAAAGAGTAGAATATGTGCTTGAGTCAGACAAGAGAAGCCACCTCATGGACCTTCTTCATGCTCAAAGGGAAACTGGAATGTATGGCAAGCAAGGTCTGACTTTAGTTTTTGTGGAAACAAAGAAAGGAGCTGACGCATTGGAACACTGCTTGTGTGTTAATGGGTTTCCTGCAACTTGCATTCATGGTGACAGAACACAACAAGAAAGAGAACATGCATTGAGGTCGTTCAAGACTGGAAACACGCCAATTCTAGTGGCAACCGATGTTGCAGCACGTGGTCTTGATATTCCACGGGTAGCACATGTGGTAAATTTTGATCTTCCCAATGACATTGATGATTATGTGCACCGGATAGGAAGAACAGGGCGAGCTGGTAAAATGGGATTAGCAACAGCCTTCTTCAATGAAGGTAATTTGTCCTTGGCTAAACCATTGGCTGATCTGATGCAAGAGGCAAATCAAGAAGTGCCTGTCTGGCTCACCCGCTATGCAGCAAAAGCTTCTTATGGTGGTGGCAACAGAAATAGGCGGAACGGGGGAGCCCGTTTTGGTGGCCGTGATTTTAGGAGGGAGGGCTCAACTAATAAAGGATCAGATTACTATGGTGGAACTGGTGGTTATGGGGTTCCTGGCAGTTATGGTGGAGGGTATGGTCAAGGGGTGACAAGTGCTTGGGATTAGATTAGTGTGACATCTCTAATTCATTCTCATGTTGAGTGTATATAAATTTCAGACTTTAATGATGTAAAGTTGTATCTTCTCAACCATGGTTTGCCTGAATCCATGCACTCCTTACTACAGGAAATCTTTTTGTCATAGGAAAGATTTNCAATTGGCTTGGTTTTGCTGGTTAGGCAGATAGGTGTGGTTGGGAAATGATGCATGTGGAGAAGATAAATTCTGCAAGAGCAGCCCCAAAATTTCTGACTAGATTATTTGTCGTAAGAGTCTGTAGAAGAGGGAGAGAGTGTAAAGTATATACAGATTGCATGGAGATCAAAGGTGCAAGGGCTGATATTGCTGAGTTTATATTGTGAGTAGTATGCCATGTTTTGAATTTTGATAGGGTCCTGCGCTTAATTACCTAATCTTGTCTTTTCTTTACTAGAAACCAACAAATTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00593	15296	20208	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K11594	DDX3X, bel	EC:3.6.4.13	RIG-I-like receptor signaling pathway	map04622
			RIG-I-like receptor signaling pathway	map04622
			Viral carcinogenesis	map05203
			Viral carcinogenesis	map05203
			Hepatitis B	map05161
			Hepatitis B	map05161

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000593s00016422.1	PF00270.24	DEAD	171	351	3.20E-45
Glyur000593s00016422.1	PF00271.26	Helicase_C	429	501	7.30E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	28.991
SRR1783600	control	29.148
SRR1783602	moderate drought stress	22.008
SRR1811619	moderate drought stress	21.717

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	40.210
DRR006520	Root Summer glycyrrhizin high producing strain	39.815
DRR006521	Root Winter glycyrrhizin high producing strain	39.606
DRR006522	Root Winter glycyrrhizin high producing strain	38.891
DRR006523	Root Summer glycyrrhizin low producing strain	39.402
DRR006524	Root Summer glycyrrhizin low producing strain	39.256
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.862
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.550

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	39.635
SRR2868004	Drought Stress (root)	31.264
SRR2967015	Control (root)	39.480

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.254
SRR9715740	Leaf	11.472
SRR9715741	Leaf	15.805
SRR9715739	Root	8.592
SRR9715742	Root	23.907
SRR9715743	Root	19.124

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	31.409
SRR8749028	MeJA induced 9h	35.172
SRR8749029	MeJA induced 9h	35.300
SRR8749030	Uninduced	41.885
SRR8749031	Uninduced	53.502
SRR8749032	Uninduced	39.213

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	41.356
SRR8400027	Control - Root	39.586