Gene detail

Gene detail information of Glyur000592s00020599.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G33310.3	6.00E-45	auxin-induced protein 13
NR	XP_007144850.1	8.50E-139	hypothetical protein PHAVU_007G189400g [Phaseolus vulgaris]
Swissprot	tr\|Q38829\|IAA11_ARATH	1.00E-57	Auxin-responsive protein IAA11
trEMBL	tr\|V7BG36\|V7BG36_PHAVU	3.00E-139	Auxin-induced protein {ECO:0000256\|RuleBase:RU004549}

Sequence

Transcript Sequence

>Glyur000592s00020599.1
ATGGAGGAGACGCACAAACTAGACCAGACAGGTGGGATTTTTCGTGTTCCCAGTGGATTTCCCAGTGGTGGGTCGATGTCAACGGTGTCTAAAGATGATAACTTGGCACTCTCCTCTGAGGATTCTTCTAGCCCAGATGAGTCTGAGCTTGAATTGGGTCTTGGGTTAAGCCTCTCTCACCCTCATGCTTCTCCTCTTTCTTCAAAGACTCNACACCACCATGCTCCTCCTTTTGCTAGAATTTTCACGGCTAAGGATTTTCCTTCTTCAGTATCATCATCACCTAACGCTTCAGCTGGGACCAAGAGAACCGCTGATTCTCTTGTTGCTATCGGATGGCCTCCCCTTCGAGCGTATAGAATGAGTAGCTTTAATAGCCATGCAAAATCAACTGAAGTATTCAACTCTGTGGCTGAGAAGAGTCAGAGCAATAATGCTGTGGTAAGGAAGAGTGCTGCTGACAATGGGAATGATAATAACAGCATTAATGTCAAAGAAAAGAGACACCACAGGAGTTCCCCATTTGTCAAGGTAAATATGGATGGGACACCGATCGGAAGAAAGGTTGATTTGAGTGCTCATAGTTCCTATGAAACCTTAGCACAAACATTGGAGGATATGTTTCATGAATCCGCTACAGGAATCACTTGCAAAGGATCAAATGGGGAGGACCATGGCACTATTATTGGAGGAGAAAGGCATTCAAAATTGTTGGATGGATCTTCCAACTTTGTGCTCACTTATGAAGACAAGGATGGAGATTGGATGCTTGTTGGAGATGTTCCTTGGGGGATGTTCCTTAGCTCGGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGCTAATGGACTTGCACCAAGATTGGAAGAAAAGAACAGCAGACAGAAAAGCAAGCCCATATAGATATTTGTTTTCATGGCTAGGGATAAGTAGAAACTTATCACCTTGAATGTAATGCAAATAGAAGAGGAGGAAAAACAAAAGAGAAAAAGTAAAGGCATACAGCAAGTAAATGGATTTTGAGATTCAAGTGATCAAACCTTTTTTTTTTTGCTTTACCGATTCAGTTTGTTTTTTGTTTTACTTGGGGCCCGGTTGGATTGGCTTATTTCCAACTTATTTGGGCTTTTNTACTTCCATGAGCACTTGTAAGAGTGTTTGGGTGAGCTTATGAAAAAGAGCGTATGTCATGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00592	118651	122914	-

Gene family

Gene family	subfamily
Transcription Factors Family	AUX/IAA
EAR motif-containing Proteins	AUX/IAA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000592s00020599.1	PF02309.11	AUX_IAA	104	287	1.60E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	25.747
SRR1783600	control	25.823
SRR1783602	moderate drought stress	34.065
SRR1811619	moderate drought stress	34.528

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	37.817
DRR006520	Root Summer glycyrrhizin high producing strain	37.104
DRR006521	Root Winter glycyrrhizin high producing strain	49.803
DRR006522	Root Winter glycyrrhizin high producing strain	48.668
DRR006523	Root Summer glycyrrhizin low producing strain	36.833
DRR006524	Root Summer glycyrrhizin low producing strain	36.636
DRR006525	Leaf Summer glycyrrhizin high producing strain	35.971
DRR006526	Leaf Summer glycyrrhizin high producing strain	36.221

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	35.075
SRR2868004	Drought Stress (root)	54.479
SRR2967015	Control (root)	34.795

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	43.087
SRR9715740	Leaf	37.713
SRR9715741	Leaf	37.511
SRR9715739	Root	16.453
SRR9715742	Root	32.832
SRR9715743	Root	30.937

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	87.743
SRR8749028	MeJA induced 9h	153.857
SRR8749029	MeJA induced 9h	118.404
SRR8749030	Uninduced	29.213
SRR8749031	Uninduced	51.106
SRR8749032	Uninduced	61.269

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	37.573
SRR8400027	Control - Root	46.327