Gene detail

Gene detail information of Glyur000592s00020598.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G28650.1	0	Leucine-rich repeat transmembrane protein kinase family protein
NR	XP_004495057.1	0	PREDICTED: leucine-rich repeat receptor-like protein kinase PXL2-like [Cicer arietinum]
COG	YP_004775215.1	6.00E-59	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9M0G7\|PXL2_ARATH	0	Leucine-rich repeat receptor-like protein kinase PXL2 (Precursor)
trEMBL	tr\|A0A072VLH9\|A0A072VLH9_MEDTR	0	LRR receptor-like kinase family protein {ECO:0000313\|EMBL:KEH42461.1}

Sequence

Transcript Sequence

>Glyur000592s00020598.1
TAGAGAGTGCAAATGGTTGAATACTGAAAGAGTTGATCAAGCAGAAGAAGAGCAAAAGATGCAGCTGAAAACTCAGTTTTTCTTCTTCTTCTTCTTCTTCTGTTGTTGCATTTGCTGTTTCACTTATGTTTTTTCTGCTGAAGCAAATGATGAAGCATCTGGTTTACTCTCTATAAAAGAGGGTCTCATTGATCCATTGAATAGCTTGCAGAATTGGAAATTGGCACCAGGGAAGGATGCAGCACAAGCTCATTGTAACTGGACTGGTGTTCAATGCAACTCAGCTGGAGCTGTAGAGAAGCTTGATCTGTCCCACATGAATCTCAGTGGCAGTGTTTCCAATGAGATACAAAGGCTAAAGGGTCTCACTTCTCTCAACTTGTGCTGCAATGGATTTGAGTCAACACTGACAAAATCCATAGCCAATCTCACCTCACTCAAGAGCCTTGATGTGAGTCAAAATTTCTTCACTGGTGACTTTCCATTAGGCCTTGGAAAAAAGGTATCAGGACTTGTGAACTTGAATGCATCCAGNAACAATTTCTCTGGTTTTCTCCCTGAGGACCTTGGAAATGTCTCTTCCTTAGAGACACTGGATCTCAGAGGCAGCTTCTTTGAAGGGTCAGTTCCTAAATCCTTCAGNGGCCTGAGTAAGTTGAAGTTCCTTGGTCTATCTGGGAATAATCTCACAGGGAAAATCCCAGTAGAGNTGGGAAAACTTTCATCACTGGAGTATATGATCATTGGATANAATGAATTTGAAGGTGGGATTCCANCAGAGTTTGGNAANTTAACCAAGNTGAAGTATCTTGACTTAGCAGAAGGCAATCTTGGTGGTGAGATTCCAGCTGANTTGGGAAAGCTCAAGTTATTGAACACAGTTTTCTTATACAAGAACAATTTTGAAGGCAAGATTCCANCAGCTATTGGCAACATGACTTCATTGGTGTTGCTGGATCTCTCAGACAACATGTTATCAGGNAACATTCCAGCTGAAATAAGTCAGNTGAAGAATTTACAGCTTCTGAACTTCATGCGGAACCGGCTATCCGGTCCNGTGCCTTATGGCCTTGGAGATTTGCCTCAACTAGAAGTGCTTGAGCTATGGAACAATTCCTTGTCAGGGCCATTGCCTAGTGGCCTTGGCAAGAACTCNCCGCTGCAGTGGTTGGATGTATCATCCAACTCACTCTCCGGTGAGATTCCGGAAACTCTTTGCACCAAGGGCAATCTCACCAAGCTTATACTTTTCAACAATGCCTTCAAGGGTCCAATTCCAGAAGGCCTATCAAAGTGTCCTTTGCTTGTTCGCGTTCGGATTCAAAACAATTTCCTTTCCGGGACGATTCCTGTAGGTTTTGGTAAGCTTGGGAAGCTTCAGAGGCTAGAATTGGCTAACAATAGTCTCACTGGTGGAATTCCTAATGACCTTGCTTCTTCCACATCCCTTTCTTTCATAGATTTCTCTAGAAACAACCTCCATTCTTTTCTTCCTTCCACCATTGTTTCCATTCCAAATCTTCAAACATTCATTGTCTCCAACAACAACTTGGAAGGCGAGATCCCGGACCAATTCCAGGACTGTCCCTCGCTCGGAGTCCTTGATCTCTCATCAAACCATTTCTCAGGAAGCATTCCAGCAAGCATTGCTTCATGTCAGAAATTGGTAAAACTGAGCCTACAGAACAACCAATTGACTAGTGGCATCCCAAAAGCAATAGCAAGCATGCCTACATTGGCCATTCTTGATCTTGCTAACAACTCTCTAACCAGTCAAATACCCGAAAGCTTTGGTATGTCTCCAGCTCTGGAAACATTCAATGTCTCATACAACAAGCTACAAGGTCCTGTCCCAGAAAATGGAGTGCTGAGAACAGTAAATCCAAATGATCTTGTGGGCAATGCTGGCCTATGTGGTNGTGTCCTNCCTCCATGTGGCCAAACCAAAGCATATTCAATAAGGCATGGAAGCTCATCACATGCAAAGCACATCATTGTAGGATGGATAATTGGGATATCATCAACCTTAGCCATTGGTGTTGCTACTTTGGTGGCAAGATCTATATACATAAGGTGGTACACCGAAGGAATGTGCTTCCGCGGTAGATTTTACATCGGTAGCAAGGGGTGGCCTTGGAGGTTGATGGCATTTCAGAGGCTTGATTTTACAAGTACTGACATTTTATCCTGCATCAAGGAAACAAATGTGATTGGCATGGGTGCAACTGGNGTTGTTTATAAGGCTGAGATACCTCAATCAAGTACAGTTGTGGCAGTAAAAAAATTGTGGAAATCGGGATCTGATACCGGAGTAGGAGGAAGTGGCGACGATCTCGTCGGAGAGGTGAATCTTCTAGGGAGGCTAAGGCATAGGAACATTGTTAGACTACTAGGATTTCTTTATAATGACANTGATGTGATGATAGTTTATGAATTCATGCACAATGGAAACCTGGGAGATGCCTTGCATGGTAAACAAGCNGGGAGGTTGCTTGTAGACTGGGTTTCCCGGTATAACATAGCTGTAGGGATTGCACAAGGGCTTGCTTATCTTCATCATGATTGTCATCCGCCTGTTATCCATCGCGACATCAAGTCGAACAATATACTGCTTGATGCAAATCTTGAGGCAAGGATAGCAGATTTTGGGTTAGCCAAGATGATGATCCGGAAGAACGAAACGGTCTCCATGATTGCCGGATCCTATGGTTACATTGCCCCTGAATATGGATACTCCTTGAAGGTGGATGAAAAGATTGACATTTACAGTTATGGGATTGTTCTGTTGGAGCTTCTGACAGGAAAGCGACCTTTAGATCCGGAGTTCGGAGAATCGATAGACATTGTAGGGTGGATAAGAAGGAAGATAGACAACAAAAAATCTCCAGAAGAGGCATTAGACCCCAATGTAGGAAATTGCAAGCATGTTCAAGAAGAGATGCTTTTAGTTCTCAGGATAGCATTGCTTTGCACTGCCAAGCTCCCCAAGGATAGACCCTCCATGAGAGATGTTATAATGATGCTAGGAGAGGCAAAGCCTAGGAGAAAGAGCAGTATGAGCAATGAAACAGTTGCAGCTGACAAGGAGATGCTAGTAATTAGCACATCACCAGTTAATGGCCTTCTTTAGGAACCAAAAAAATGGACTTTGATAGAGACTTGGATATTATGGGATACTAAGTCCCACATCGTATAGTATGAGATACTCGGTAGAGC

Protein Sequence

>Glyur000592s00020598.1
MQLKTQFFFFFFFFCCCICCFTYVFSAEANDEASGLLSIKEGLIDPLNSLQNWKLAPGKDAAQAHCNWTGVQCNSAGAVEKLDLSHMNLSGSVSNEIQRLKGLTSLNLCCNGFESTLTKSIANLTSLKSLDVSQNFFTGDFPLGLGKKVSGLVNLNASXNNFSGFLPEDLGNVSSLETLDLRGSFFEGSVPKSFXGLSKLKFLGLSGNNLTGKIPVEXGKLSSLEYMIIGXNEFEGGIPXEFGXLTKXKYLDLAEGNLGGEIPAXLGKLKLLNTVFLYKNNFEGKIPXAIGNMTSLVLLDLSDNMLSGNIPAEISQXKNLQLLNFMRNRLSGPVPYGLGDLPQLEVLELWNNSLSGPLPSGLGKNSPLQWLDVSSNSLSGEIPETLCTKGNLTKLILFNNAFKGPIPEGLSKCPLLVRVRIQNNFLSGTIPVGFGKLGKLQRLELANNSLTGGIPNDLASSTSLSFIDFSRNNLHSFLPSTIVSIPNLQTFIVSNNNLEGEIPDQFQDCPSLGVLDLSSNHFSGSIPASIASCQKLVKLSLQNNQLTSGIPKAIASMPTLAILDLANNSLTSQIPESFGMSPALETFNVSYNKLQGPVPENGVLRTVNPNDLVGNAGLCGXVLPPCGQTKAYSIRHGSSSHAKHIIVGWIIGISSTLAIGVATLVARSIYIRWYTEGMCFRGRFYIGSKGWPWRLMAFQRLDFTSTDILSCIKETNVIGMGATGVVYKAEIPQSSTVVAVKKLWKSGSDTGVGGSGDDLVGEVNLLGRLRHRNIVRLLGFLYNDXDVMIVYEFMHNGNLGDALHGKQAGRLLVDWVSRYNIAVGIAQGLAYLHHDCHPPVIHRDIKSNNILLDANLEARIADFGLAKMMIRKNETVSMIAGSYGYIAPEYGYSLKVDEKIDIYSYGIVLLELLTGKRPLDPEFGESIDIVGWIRRKIDNKKSPEEALDPNVGNCKHVQEEMLLVLRIALLCTAKLPKDRPSMRDVIMMLGEAKPRRKSSMSNETVAADKEMLVISTSPVNGLL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00592	112969	116544	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000592s00020598.1	PF08263.7	LRRNT_2	29	74	2.10E-07
Glyur000592s00020598.1	PF13516.1	LRR_6	124	146	1.8
Glyur000592s00020598.1	PF13504.1	LRR_7	199	212	3
Glyur000592s00020598.1	PF13516.1	LRR_6	366	387	1.4
Glyur000592s00020598.1	PF13855.1	LRR_8	486	546	7.60E-10
Glyur000592s00020598.1	PF00560.28	LRR_1	560	578	0.65
Glyur000592s00020598.1	PF00069.20	Pkinase	714	962	1.70E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.934
SRR1783600	control	1.893
SRR1783602	moderate drought stress	0.211
SRR1811619	moderate drought stress	0.255

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.169
DRR006520	Root Summer glycyrrhizin high producing strain	0.166
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.034
DRR006524	Root Summer glycyrrhizin low producing strain	0.029
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.692
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.624

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.095
SRR2868004	Drought Stress (root)	3.074
SRR2967015	Control (root)	2.393

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.225
SRR9715740	Leaf	0.382
SRR9715741	Leaf	0.576
SRR9715739	Root	0.363
SRR9715742	Root	0.431
SRR9715743	Root	0.333

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.010
SRR8749029	MeJA induced 9h	0.009
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.203
SRR8749032	Uninduced	0.299

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.353
SRR8400027	Control - Root	1.720