Gene detail information of Glyur000592s00020597 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G28660.2 | 2.00E-54 | photosystem II reaction center PSB28 protein |
| NR | XP_004495056.1 | 9.06E-80 | PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic-like [Cicer arietinum] |
| Swissprot | tr|Q0JG75|PSB28_ORYSJ | 6.00E-71 | Photosystem II reaction center PSB28 protein, chloroplastic (Precursor) |
| trEMBL | tr|A0A072VWK2|A0A072VWK2_MEDTR | 5.00E-80 | Photosystem II reaction center Psb28 protein {ECO:0000256|RuleBase:RU003509} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00592 | 106904 | 107317 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000592s00020597.1 | PF03912.9 | Psb28 | 29 | 134 | 3.70E-41 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.692 |
| SRR1783600 | control | 6.369 |
| SRR1783602 | moderate drought stress | 3.599 |
| SRR1811619 | moderate drought stress | 3.645 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.509 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.458 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.635 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.399 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 327.438 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 298.742 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 24.291 |
| SRR2868004 | Drought Stress (root) | 17.647 |
| SRR2967015 | Control (root) | 11.865 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 197.311 |
| SRR9715740 | Leaf | 295.866 |
| SRR9715741 | Leaf | 149.822 |
| SRR9715739 | Root | 2.402 |
| SRR9715742 | Root | 6.285 |
| SRR9715743 | Root | 5.882 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.604 |
| SRR8749028 | MeJA induced 9h | 17.275 |
| SRR8749029 | MeJA induced 9h | 19.248 |
| SRR8749030 | Uninduced | 5.526 |
| SRR8749031 | Uninduced | 1.666 |
| SRR8749032 | Uninduced | 5.250 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.314 |
| SRR8400027 | Control - Root | 16.057 |