Gene detail information of Glyur000592s00020596.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G20370.1 | 0 | Exostosin family protein |
| NR | XP_003541372.1 | 0 | PREDICTED: xyloglucan galactosyltransferase KATAMARI1 isoform X1 [Glycine max] |
| Swissprot | tr|Q7XJ98|KATAM_ARATH | 0 | Xyloglucan galactosyltransferase KATAMARI1 |
| trEMBL | tr|A0A072VKC5|A0A072VKC5_MEDTR | 0 | Xyloglucan galactosyltransferase KATAMARI-like protein {ECO:0000313|EMBL:KEH42459.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00592 | 103528 | 105375 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT47 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000592s00020596.1 | PF03016.10 | Exostosin | 155 | 496 | 8.90E-85 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.180 |
| SRR1783600 | control | 19.248 |
| SRR1783602 | moderate drought stress | 13.843 |
| SRR1811619 | moderate drought stress | 13.985 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.697 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.208 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.310 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.899 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 35.283 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 35.524 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.501 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.524 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.720 |
| SRR2868004 | Drought Stress (root) | 28.696 |
| SRR2967015 | Control (root) | 22.926 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 26.966 |
| SRR9715740 | Leaf | 17.352 |
| SRR9715741 | Leaf | 26.827 |
| SRR9715739 | Root | 36.232 |
| SRR9715742 | Root | 32.763 |
| SRR9715743 | Root | 33.925 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 66.397 |
| SRR8749028 | MeJA induced 9h | 81.870 |
| SRR8749029 | MeJA induced 9h | 102.407 |
| SRR8749030 | Uninduced | 68.109 |
| SRR8749031 | Uninduced | 71.955 |
| SRR8749032 | Uninduced | 139.786 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 37.584 |
| SRR8400027 | Control - Root | 49.880 |