Gene detail information of Glyur000592s00020591 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G04130.1 | 6.00E-108 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | KHN48952.1 | 0 | Tetratricopeptide repeat protein 4 like [Glycine soja] |
| trEMBL | tr|I1LYQ2|I1LYQ2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G18990.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00592 | 65563 | 68625 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000592s00020591.1 | PF13414.1 | TPR_11 | 30 | 109 | 7.90E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.092 |
| SRR1783600 | control | 5.083 |
| SRR1783602 | moderate drought stress | 7.321 |
| SRR1811619 | moderate drought stress | 7.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.201 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.394 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.325 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.276 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.258 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.301 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.358 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.883 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.641 |
| SRR2868004 | Drought Stress (root) | 17.308 |
| SRR2967015 | Control (root) | 12.563 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.570 |
| SRR9715740 | Leaf | 17.401 |
| SRR9715741 | Leaf | 13.718 |
| SRR9715739 | Root | 2.722 |
| SRR9715742 | Root | 9.997 |
| SRR9715743 | Root | 7.771 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.133 |
| SRR8749028 | MeJA induced 9h | 9.595 |
| SRR8749029 | MeJA induced 9h | 6.094 |
| SRR8749030 | Uninduced | 4.913 |
| SRR8749031 | Uninduced | 1.753 |
| SRR8749032 | Uninduced | 2.942 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.302 |
| SRR8400027 | Control - Root | 20.326 |