Gene detail

Gene detail information of Glyur000592s00020583

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G43920.1	6.00E-156	transducin family protein / WD-40 repeat family protein
NR	XP_004495043.1	0	PREDICTED: WD repeat-containing protein 26-like [Cicer arietinum]
COG	YP_003889651.1	2.00E-19	Serine/threonine-protein kinase-like domain-containing protein [Cyanothece sp. PCC 7822]
Swissprot	tr\|Q8W1K8\|MUT11_CHLRE	2.00E-13	Protein Mut11
trEMBL	tr\|A0A072VM11\|A0A072VM11_MEDTR	0	Transducin/WD40 repeat protein {ECO:0000313\|EMBL:KEH42443.1}

Sequence

Transcript Sequence

>Glyur000592s00020583.1
GACATTTTTCACAATTCACTCACGGCTCTTCTTCTCATCATGCGGATCCGAAGCTTGGTGAGGGCCGGGGGATAAGAAGAAGAAACTGAACTAAGTCGACCCCTCCACGGCTCCACCCAAAGATAACAAAAAAACCGTCTTTTCAGTTTTCAACACACTGGCACAAGACAAGAGAAGGAACCAAACCCAAACCCCAAACCCAGGTTGGTTCACTTCACTACTCCACTTCACACCCCCCCCTTTTGTTTTTGTTTTCTTCTATCTATATCGCTTTGTCTCTCAAACCATTCCAATTCTCACCGTCATCATCACAAACCCTTAATTTCAGTTTCAGTCTCAGTCTACGTGGCTTCTTCGTTTAATCGCGTAATTCTGAGTTTCACACATAGCAAAACAAGCGTATGTATCTTTTGACTTCGTTCATCGTGCTGGCAAAAAGTTGATGCTGTTCGAATTCAGAATCATATATAGCTCTTACAGTTAGTTCCTGATTGATTCAGTGAATTGAAATCGTGATTCCAGAATTTTCGAATCGTGTTTCCCTTTGGTCACGTGACTTCGGGGTATCCGAGGTTTAAGGTTTTTTGTTTTAGTAAAATCTGTATGAAGCCGAGTGTCTCATGTGATGGAGACTCATTCTGAGGTGCTAGGCTCAAAAGGGTTGATTAAAAAACAAGAATTTGTGAGGATCATAGTCCAGTGTCTTTATTCATTAGGGTACACAAAGTCTGCGTCTTGTTTGGAATCCGAATCCGGGGTTTCCTACAAGTCCAAGGAGTTCCAATTGCTCGAATCTCACGTGTTGGGTGGTAATTGGGATGCCTGTGTTGGTTTCCTCAATTCCATGAGGGAATATGTGTTTGGTGAAGCCATAGAGTCTGCTTTGTTTCTTGTCTTTAGAGGGTGTCTCATGGAGTATATGAAGCGCGGCGAGGATGCTTTGGCTTTGGATGTGTTGAGGAAGCGGGTTTCCGCGTTGCACATGGACCGTTACAAGGTTCACAGCCTTGCTAATAGTATGCTCACTTTTAAGGATGTGGAGGAGTTAGGTGTGGTGGATGGTGATGGTGGTTTTGATGTTGTTCGTGATTTGCGGAGCAAGTTGTTGATGGATTTGGAGAAATTGCTCCCTCCACCGATTTCGCTGCCTGATGGAAGGCTGGAGCATTTGGTCGAGACCACCGTTACGGCTTGGGTTGATTCCTGCTTGTATCACAGTTCGTCGAGTCCGGTTTCACTTTATGAGGATCATCATTGTGGTAGAGATCAGATTCCTACTGCCACCACTCAGATATTAACTGGACATAGAAATGAAGTTTGGTTTGTTCAATTTTCTAATAATGGCGAGTATCTAGCTTCTTCATCCAATGATTTTACAGCTATCATATGGAAGATGCTGAAGGTCCACTACAAGATTCCTTGCCAGAGTCCTCATTACAACATAACAAAGCTGGACAGAGCAATTGCCAAGTTTGTTCCTGGGAAAATGGTTCTAGAAGATGGGAAATTGATATTGAAACACACACTTTGCGGTCACCAACGTGCCGTATCTTTTGTGGCATGGAGTCCAGATGACACCAAGTTGCTCACTTGTGGGAACACAGAAGTTCTGAAGCTGTGGGATGTTGAAACAGGTACATGCAAGCATACATTTGGGAATCAAGGCTTTGTTGTCAGCTCATGTGCCTGGTTTCCCAACTCAACGCAGTTTGTGTGTGGCAGTTCCAACCCTGAAAAGGGCATCTGCATGTGGGATTGTGACGGAAACGAGATAAGAGCGTGGAGAGGAACGAGGATGCCCAAAGTTGTAGATCTCGCTGTTACTCCAGACGGCGAGTATCTTATCAGCATATTCATGGACAAAGAAATCCGGATTTTGCATATGGGAACCAATGCCGAACGAGTCATTTCGGAGGAGCACCCAATCACATCACTTTCAGTTTCTGGAGATAGTAAGTTCTTCATTGTCAATCTGAACAGCCAGGAGATCCATATGTGGGATGTCGCCGGTAAATGGAATAAGCCATTGAGGTATACATTTGGAATTCGCGGAGTTCTAGGCCAATAGAGGTTTTATCTGGGCACTCCCTCACTGTAAATTGTGTGAGCTGGAATCCTAAAAGGCCACAAATGTTGGCATCAGCAAGTGATGATTATACAGTTCGTATATGGGGACCCAGCTTATAGAAAAGAACGCAACTTGAGTCTTGAATAGATCAGTTGAAACCAAGTGCACATTTAGTTATCAAGCCTAGTTTTTAGTGTATATAAAAAACTCTACATTATTTTTCCCCATCTCTAAGTTGTTCAGTATGAGTTTGTAAAGTCCTGGCTTGTTCATGCAGGAATTTTGGCGTNCATTTCCATCTGTAAAATCTTCTATCCCTTCATTTGGTATTTGGTAATTTCCCCTTTAATTCATGCAGAAACTAGAAAAAACTGATGGGTTAAAAGTTAGGATTTATTCTTGTTCACATTTTATATTTATATTTATGTTTTTTTTCTTTTGAGGTTATTCCATTCTGGGGTGGGATGAATACTTGCTCAAGGGTTTTTCCAAAAGTGCTTTTCCATGAGCTTGATTCCCGGATACCGTTCAACTTCCGAGTTCAAAATTGCTTACCTCTTGTCAAGGGGTGCTAGCTCAGTTGACAGAGTTTAGCATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00592	14992	21014	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000592s00020583.1	PF00400.27	WD40	221	256	1.60E-07
Glyur000592s00020583.1	PF00400.27	WD40	298	333	4.60E-06
Glyur000592s00020583.1	PF00400.27	WD40	337	369	0.0022

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.833
SRR1783600	control	5.945
SRR1783602	moderate drought stress	8.454
SRR1811619	moderate drought stress	8.470

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.973
DRR006520	Root Summer glycyrrhizin high producing strain	9.590
DRR006521	Root Winter glycyrrhizin high producing strain	45.056
DRR006522	Root Winter glycyrrhizin high producing strain	43.833
DRR006523	Root Summer glycyrrhizin low producing strain	5.041
DRR006524	Root Summer glycyrrhizin low producing strain	5.170
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.587
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.978

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.098
SRR2868004	Drought Stress (root)	17.636
SRR2967015	Control (root)	20.727

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.505
SRR9715740	Leaf	14.487
SRR9715741	Leaf	15.886
SRR9715739	Root	5.834
SRR9715742	Root	10.925
SRR9715743	Root	8.846

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.980
SRR8749028	MeJA induced 9h	13.437
SRR8749029	MeJA induced 9h	5.814
SRR8749030	Uninduced	12.326
SRR8749031	Uninduced	7.457
SRR8749032	Uninduced	7.574

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.050
SRR8400027	Control - Root	12.753