Gene detail

Gene detail information of Glyur000591s00018669

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17860.1	1.00E-123	calcium exchanger 7
NR	XP_003554051.1	0	PREDICTED: cation/calcium exchanger 1-like [Glycine max]
COG	YP_001530245.1	2.00E-11	CaCA family Na(+)/Ca(+) antiporter [Desulfococcus oleovorans Hxd3]
Swissprot	tr\|Q9FKP1\|CCX1_ARATH	0	Cation/calcium exchanger 1
trEMBL	tr\|I1N8E0\|I1N8E0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G29520.1}

Sequence

Transcript Sequence

>Glyur000591s00018669.1
ATGTTCACACCACTGCCCCATATCCTTAAGAAAACTGTTCTCTATATGGAAGCCTTCATTTCCAATCCCAAGAAGCATCAACCCAGAAAACTCATCACTCATGTCCTCAACACATCCTTCATCTCCCTCCTCTGTATCCTTATTCTAGAAGCCTATCTTCACCCTTCCAATAACCGCTCAAATTTTCATCATGGTCACTCCAACAACAACAACAACAACAACACAACAACAACAACAACAACAGCCATCTTCAACCATGCTAGGTTGCTCAATGATATCAGTGTTGATGGCTGCACTGACCTTCACAACTACTCAGATTACATCTCTAAGTGCTATTATGTCAAAACCCATCTTGACTGCAGGTCAAAAGGGTACATAAACTATCTTCAAATCTTCTATTGCAATTTAGGCCATTCACCAATTCTAGGACATGCACTCCTTGCCTTGTGGCTTGTGGTGTTGTTCTACCTTTTGGGTGACACAGCTTCCAACTACTTTTGCAACTCCTTAGAGGGTCTTTCCAACATCTTGAGGCTCTCCCCAACCATTGCTGGGGTGACCCTTCTATCCCTTGGAAATGGGGCACCTGATTTTTTTGCTAGTGTTGTTTCCTTCACAGGATCCAGCAATAATGGCGAGGTTGGCCTCAACAGCATTCTAGGAGGGGCTTTTTTTGTGTCTAGTGCTGTATTGGGGATCATAAGCATTCTGGTTAGCTCAAACCAAGTTGTGGTTGATAAGGCCAGTTTCATTAGGGATGTCCTTTTCTTACTCTTCTCTCTTCTTATCCTCCTTGTCATAATTTCTATTGGTAAAATCACCTTGTTGGGTTCAATATGCTATGTTTCCATCTACTTCCTTTATGTCTGTGCTGTCTCAGCTACACATCTCTTCTATGGAGATGATGATGAGAAAGAAAGGGAATTCAAAGTCACAACAGCAGTGTCTTCTTCNGATGAGTTAGTGGAGTCTGGCATACCATTGCTGGGCTATGTTGATGATTTGAAACCAAACTTGTCATCACACAAAGTAGTGACTATTCTTGAAGGTAAGGAGCAAAAGCAGGACTGTTTTGGTGGTGGTGGTGGTGATTCATCACTTTACTGTATTTACTTGGGGAAGCTCCTAAAGGTACTAGAGTTACCTCTTAGCTTACCAAGAAGGGTTACTATACCAGTGGTGAGTGAGGAGAAGTGGTCCAAGCCATATGCAGTTATATCTGTCACATTGGCACCAGTTTTGTTGGCACTTCTTTGTAATGTCCAGAGGGAGGAAAACAGTAAATCAAGGAGCAGCCTAGTTATGTACCTAACAGCTTCTTTGATTGGCATAGTTTTGGGGAATATGGCATTTGTGACTACTAAGAGTTGTAGCCCACCAAAAAAGTCCTTTCCTTGGCTAGCAGGGGGTTTTGCTATGAGCATAACATGGACTTACATAATTGCTCAGGAGCTGGTTTCACTTTTGGTCTCAATTGGGAACATCATTGGGATTAGCCCTTCAATCCTTGGGTTAACTGTCCTAGCTTGGGGTAACTCCCTTGGGGATTTGATAGCCAATGGTGCCATGGCCTTGAATGGTGGGACAGATGGTGCCCAAATGGCTATATCAGGTTGTTATGCTGGTCCTATGTTTAACACCTTGATGGGTTTGGGCTTGCCTCTTGTTCTCTCAGCATGGTCTGAACATCCACAACCTTATGTCATTCCTAAAGACCCTTCCCTCTATGAGACACTTTTGTTCTTGATGGGAGGGTTGCTTTGGGCACTTGTGATATTGCCTAGGAAGAATATGAGGCTGGATAAATCCTTGGGAGCAGGACTCTTGAGCATTTACCTTTGCTTTTTGTTCATAAGGTTAGCCATGGCTATTGGTATTGTGAAATTCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00591	133987	135876	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000591s00018669.1	PF01699.19	Na_Ca_ex	161	291	8.80E-23
Glyur000591s00018669.1	PF01699.19	Na_Ca_ex	477	618	4.40E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.312
SRR1783600	control	18.166
SRR1783602	moderate drought stress	22.308
SRR1811619	moderate drought stress	22.215

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.128
DRR006520	Root Summer glycyrrhizin high producing strain	1.173
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.351
DRR006524	Root Summer glycyrrhizin low producing strain	0.451
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.587
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.745

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.007
SRR2868004	Drought Stress (root)	0.340
SRR2967015	Control (root)	0.013

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.757
SRR9715740	Leaf	22.386
SRR9715741	Leaf	16.480
SRR9715739	Root	22.514
SRR9715742	Root	8.327
SRR9715743	Root	10.999

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.030
SRR8749028	MeJA induced 9h	0.621
SRR8749029	MeJA induced 9h	0.092
SRR8749030	Uninduced	0.474
SRR8749031	Uninduced	0.042
SRR8749032	Uninduced	0.251

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.275
SRR8400027	Control - Root	0.451