Gene detail information of Glyur000591s00018665.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G03710.10polyribonucleotide nucleotidyltransferase, putative
NRXP_004493216.10PREDICTED: probable polyribonucleotide nucleotidyltransferase 1, chloroplastic-like [Cicer arietinum]
COGNP_220363.10Polyribonucleotide Nucleotidyltransferase [Chlamydia trachomatis D/UW-3/CX]
Swissprottr|Q8GZQ3|PNP1_ARATH0Polyribonucleotide nucleotidyltransferase 1, chloroplastic (Precursor)
trEMBLtr|G7L1J6|G7L1J6_MEDTR0Polyribonucleotide nucleotidyltransferase {ECO:0000313|EMBL:AES80930.2}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold0059197743122164-


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
K00962pnp, PNPT1EC:2.7.7.8Purine metabolismmap00230
Pyrimidine metabolismmap00240
RNA degradationmap03018


Gene Ontology

biological_process

GO:0006396  RNA processing

GO:0006402  mRNA catabolic process


molecular_function

GO:0000175  3'-5'-exoribonuclease activity

GO:0003676  nucleic acid binding

GO:0003723  RNA binding

GO:0004654  polyribonucleotide nucleotidyltransferase activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000591s00018665.1PF01138.16RNase_PH922047.30E-10
Glyur000591s00018665.1PF03725.10RNase_PH_C2082719.30E-17
Glyur000591s00018665.1PF03726.9PNPase3014292.30E-05
Glyur000591s00018665.1PF01138.16RNase_PH4335662.30E-20
Glyur000591s00018665.1PF03725.10RNase_PH_C5716451.10E-06
Glyur000591s00018665.1PF00013.24KH_16737292.70E-07
Glyur000591s00018665.1PF00575.18S17527984.70E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.967
SRR1783600control4.026
SRR1783602moderate drought stress8.787
SRR1811619moderate drought stress8.534

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.325
DRR006520Root Summer glycyrrhizin high producing strain4.257
DRR006521Root Winter glycyrrhizin high producing strain2.684
DRR006522Root Winter glycyrrhizin high producing strain2.509
DRR006523Root Summer glycyrrhizin low producing strain7.113
DRR006524Root Summer glycyrrhizin low producing strain7.075
DRR006525Leaf Summer glycyrrhizin high producing strain17.971
DRR006526Leaf Summer glycyrrhizin high producing strain17.868

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)6.644
SRR2868004Drought Stress (root)6.334
SRR2967015Control (root)8.102

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf19.014
SRR9715740Leaf26.257
SRR9715741Leaf16.729
SRR9715739Root0.577
SRR9715742Root3.411
SRR9715743Root2.992

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.229
SRR8749028MeJA induced 9h9.086
SRR8749029MeJA induced 9h8.430
SRR8749030Uninduced1.090
SRR8749031Uninduced0.669
SRR8749032Uninduced1.969

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root8.090
SRR8400027Control - Root9.196

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved