Gene detail

Gene detail information of Glyur000591s00018664

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G58030.1	0	cationic amino acid transporter 2
NR	XP_004493215.1	0	PREDICTED: cationic amino acid transporter 2, vacuolar-like [Cicer arietinum]
COG	YP_006984985.1	1.00E-69	amino acid permease [Gluconobacter oxydans H24]
Swissprot	tr\|Q9ASS7\|CAAT2_ARATH	0	Cationic amino acid transporter 2, vacuolar
trEMBL	tr\|I1N8D4\|I1N8D4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G29450.1}

Sequence

Transcript Sequence

>Glyur000591s00018664.1
CAAATAATGAACCTCAATNGGACACTATCATAATTTAAAATTTTTCCTCTTTTTTTTCTCCAATAATTTCATTTTTTTTAAGCTTTTCTTATACATAACGACACCTCTACAATAGCAGGGATAATTCCTCGTTCTTTCTGAATCTGCCCACAATCCCAAACAAAATTATCATTGGAATGCGAGCAGATAAATTGGCCGATTGACATTGCTTTTTTGCATAACAATATTTGATTGGTCACAACAGCACCTTTTCTTCCGTGCTCCAATTTGTGGGAGAATCATTACTTTGATTTTCCCATTTACTGGTTCTTGTGTTTAAGCAAAGCTTGGTGTCTGTGTGTGTTTTTTCTCTTTGATGGGTGTTTCGGTTGGTTCACAATCACAAAAGGGTTCATGGTGTTCCTTGAGGTTTTTCACTAGGAAGAAACAGGTTGATTCTGCACGTAGGAACACTCAACCTCTGCTTGCCAAGGAGTTAACTGTTCCCCATCTTATTGCAATTGGTGTTGGTTCAACAATTGGTGCTGGAGTGTATGTTCTGGTTGGAACAGTTGCTCGAGAGCATGCCGGACCGTCTTTGGCCATTTCTTTCCTGATTGCTGGATTAGCAGCCGGTCTTTCCGCCTTTTGCTATGCAGAGTTGGCTTGTCGCTGCCCTTCTGCTGGGAGTGCATATCACTATTCATACATATGTCTNGGGGAAGGTGTTGCTTGGTTGATCGGCTGGGCCTTGATACTGGAATATACAATTGGTAGCGCTGCTGTTGCTCGTGGCATAACCCCCAATATAGCTCCACTTTTTGGTGGTGTGGACAATTTACCCATCTTTTTGTCACGCCAACATATTCCTGGGATTGATATTGTTGTGGACCCGTGTGCTGTGATTTTGGTATTAATTGTTACAGGACTCCTGTGTTTGGGGATCAAGGAGAGCACAGTGGTACAAGGCATAGTCACATCAGTGAATGTATGTGCATTGCTTTTTGTGATAGTAGCTGGTGGTTACTTGGGGTTCAAGTCTGGATGGGGTGGATATGAACTTCCTACTGGGTATTTTCCCTTTGGGGTGAAAAATCCTCAGAGAGATTTACCTTTGGGTATTGGAGGTTCACTGTTTCTTTGTTGTGGAATGTATGTGCTGGTCTCCATTGTTGTGGTTGGTTTAGTGCCTTATTATGCAATCGATCCGGATACCCCCATATCCTCTGCATTTGCTGACCATGGGATGCAATGGGCGGCTTACATTATAAATGCTGGAGCTTCTACAGCTCTCTGCTCAGCATTGATGGGTGGGATACTTCCCCAGCCACGAATTTTGATGGCTATGGCAAGGGATGGGCTACTGCCGCCATTTTTTTCTGACATAAATAAGCACAGCCAGGTTCCAGTTAAGGGCACAGTAATTACTGGCCTTGCGGCTGCANTCTTGGCATTTTCTATGGAAGTCTCTGAACTGGCAGGGATGGTTAGTGTTGGTACGCTTTTAGCATTCACCATGGTGGCAATATCTGTGCTGATCCTAAGATATATTCCTCCAAATGAAGTCCCATTGCCTCCTTCTCTCCAGGATTCAAATGCGGAATATGTAGAGGCAATTGTCAGTACTCCTGAGGACACAAAACCTTTAGTTGTTAAGGAGGATTTTTCCATTGATTATCCCCTTACTGCTAAACATCTTGCCATAGGCAACTATCTAAATGCGGGTAATAGACGAAGAGTTGTTGGGTGGATCATAGCATTCATATGCTTAGGGGCTGCTGTTCGATTTGCATTGTGTGGAGTTGGAGGCATTCTTCTTGTGTCTGGTCTTGTCTTCCTAACCTGTACAGAGCAAGATGATGCAAGGCACAACTTTGGGCACTCTGGAGGTTTTGTATGCCCATTTGTGCCACTGTTGCCCATAGCTTGCATTCTCATCAATTCCTACTTACTTATTAATCTTGGAGAGGCTACATGGTTGCGTGTTTCTGTTTGGTTGGCAATAGGACTACTAGTTTATGTGTTTTATGGCCGAACTCATAGCTCTTTGAAAGATGCAATTTATGTGCCAGCAAGGCAAGTGGATGAGATTTATCAAACTTCCAGAATCTATCTTTCTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00591	90413	96949	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0003333 amino acid transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0015171 amino acid transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000591s00018664.1	PF13520.1	AA_permease_2	45	219	2.80E-16
Glyur000591s00018664.1	PF13520.1	AA_permease_2	225	396	4.80E-24
Glyur000591s00018664.1	PF13906.1	AA_permease_C	506	556	7.80E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.196
SRR1783600	control	3.115
SRR1783602	moderate drought stress	5.496
SRR1811619	moderate drought stress	5.383

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.048
DRR006520	Root Summer glycyrrhizin high producing strain	5.138
DRR006521	Root Winter glycyrrhizin high producing strain	13.801
DRR006522	Root Winter glycyrrhizin high producing strain	13.344
DRR006523	Root Summer glycyrrhizin low producing strain	7.399
DRR006524	Root Summer glycyrrhizin low producing strain	6.975
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.596
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.587

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.369
SRR2868004	Drought Stress (root)	26.744
SRR2967015	Control (root)	23.378

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.809
SRR9715740	Leaf	6.172
SRR9715741	Leaf	5.405
SRR9715739	Root	7.897
SRR9715742	Root	6.969
SRR9715743	Root	6.739

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.678
SRR8749028	MeJA induced 9h	5.849
SRR8749029	MeJA induced 9h	3.271
SRR8749030	Uninduced	2.680
SRR8749031	Uninduced	5.676
SRR8749032	Uninduced	3.843

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.864
SRR8400027	Control - Root	11.997