Gene detail

Gene detail information of Glyur000591s00018657.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G33210.1	0	F-box family protein
NR	AES59185.2	0	F-box-like protein [Medicago truncatula]
COG	YP_009018.1	1.00E-11	hypothetical protein pc2019 [Candidatus Protochlamydia amoebophila UWE25]
Swissprot	tr\|Q9SMY8\|FBL15_ARATH	0	F-box/LRR-repeat protein 15
trEMBL	tr\|G7I915\|G7I915_MEDTR	0	F-box-like protein {ECO:0000313\|EMBL:AES59185.2}

Sequence

Transcript Sequence

>Glyur000591s00018657.1
CTTAGACTCTTTTATTACCATTTCTTTTGGTGTTTGAATGTCCAAAAATCAATTTCTTTTGAAAAAGAAAACGACGTCGTTGGAGGGGGGACTCTCTCCTTCACCTTAGCGCACAAAAAAGTACGAAATTTGTGATTTGCTCAGATATAGAAGAGCAAACCCAAAGGGAAGAAAAGAAAACATCCGAAGAAAGCAGCTCCCAAGATCCGATCAGATCCATCCAAGTTAAGCCCTCTTCCTCTGTCAAACTCTCTCTACCCCCTTCCGTTTTCTCTCTCTTCCACTGTTTCCACCCAATTTCTCCGTTACTCCGTTTCCGAAATTGGTTTCGCCCTCTTTCTCTCTCTCAGGTTAGGGTTTGTTGAACTCCTTGTCCAAAATGCGCGGGATCGAGACCCAGGGTTCCTGAACCCTAACTCCCAAGTGCATGAAGCTCTGGTGGTGCTTCCTATGCTTCAACGAAAAAGAAGAAGAAGAAAAAGTGGTGAGAGAGGAAGAGCGTACTAGGATTCCGGAATCCATGAAGGAAGAGGACCTTTTCGGAAACGAGATCGTCGTTTCCTCTGCTGTTCCTGACGGTGACGACGAAGCCGGGGTCGGAAATGAGGAGTTTACCGCTGCAGGTGCCGCCATTGACGGCGAGCACAACTGGTTCCGGTTGCATGAGGAGATGGCGAGGGTTTTGCCGTTGCGGCGGTCCGAGGGAGAGAGTAGTTCCGGCGGCGCGGCTGCTGCTGCTGCGATTCTCTCTTCGGAGAGCCCTGCTGCCGAGGAGAGCCGCGATTCGAGTCACAAGCGCGCCAAGTTCTACAATGAGTGTCACTTTGCAACCCCGACGTCTTCTAGCACTGTGAAATACTCTGTTGACTTTGGAGATTACGACTCATCATCTCTTCGCCCTAGTAATGTCACTTGTTATGACGATTTTACATTGATGTGCACTGGTGAGGACAGTAACGGTGTGAAAGACGGTGAAGGAAATGAAGGTGACATTTCTAAACTGGAAGATCCAGAGGTTAGGATGGATTTCACGGATGACTTGTTGCATATGGTTTTCTCATTTCTGGACCATACCAATCTCTGTAAAGCTGCCAGAGTTTGTAAGCAGTGGCGAAGTGCTAGTGCTCATGAAGATTTCTGGAGGAGTTTGAATTTTGAAAATCGGAACATATCTGTAGAACAATTTGAGGACATGTGTAGGCGTTATCCTAATGCCACGGCAATGAGCATATCTGGTCCTGCTATTTACTTGCTTGTCATGAAGGCAATCTCTTCATTAAGGAATCTTGAGGTTTTAACATTAGGAAGAGGACAGATAGCGGATGCTTTTTTCCTTGCATTACCTGATTGCTCTATGCTGAAAACACTGATTATCAATGATTCTACACTTGGCAATGGTATTCAGGAGATATCTATCATTCATGAGAGATTGTGTCATCTTGAATTAACAAAATGCCGTGTCATGAGAATAGCAGTCAGGTGCCCACAACTTGAAATTATGTCATTGAAGCGCAGTAACATGGCACAGGTTGTGCTTAATTGCCCTCTTTTGCATGAACTTGATATAGGCTCTTGCCACAAACTTCCTGATGCAGCGATTCGTGCTGCTGCAACTTCATGCCCTCAACTAGTGTCTCTGGACATGGCTAATTGTTCATGTGTCAGCGATGAAACACTGCGTGAAATAGCACAGACTTGTGCTAATCTTAGTATTCTCAATGCATCATACTGTCCAAACATTTCTTTGGAGTCTGTTCGACTCCCAATGTTGACAGTTCTATTGCTTCATAGTTGTGAGGGCATCACTTCTGCATCAATGTCTGCAATAGCTCATAGTTCTATGTTGGAGGTTTTGGAGCTTGACAATTGCAGTCTGTTGACTTCAGTGTCTTTGGATCTTCCACGTTTGCGGAATATTAGATTGGTACACTGCCGCAAATTTGCTGATTTGAACTTGAGGGCTGTAATGCTTTCTTCTATCATGGTGTCTAACTGCCCGGCACTCCACCGGATCAATATCACTTCAAATTCACTTCAAAAATTAGCAGTGCAAAAGCAGGATAGCTTAACTTCGTTAGCACTGCAATGCCAATCTTTACAGGAAGTGGACCTCTCTGAGTGTGAATCTTTGACAAGTTCTATATGTGATGTTTTTAGTGATGGTGGAGGGTGCCCTATGTTGAAATCACTAGTTCTTGATAATTGTGAGAGCTTGACATCAGTTCGGTTCATCAGCACCTCTTTAGTCAGTCTTTCTCTTGGTGGTTGCCGGGCAATTACTACTCTTGAACTAACATGCCCTAATCTTGAGAAAGTCATTTTGGATGGCTGTGATCATTTGGAAACAGCATCATTTTGCCCTGTTGGTCTTCGGTCTCTCAATTTAGGAATATGTCCAAAATTGAACATACTCCGCATTGATGCGTCGCTTATGGTCTCGCTTGAGTTGAAAGGATGTGGTGTACTATCTGAAGCATCCCTTAATTGTCCTCTCTTGACATCTCTGGATGCTTCTTTTTGCAGCCAACTCACTGATGACTGCTTGTCTGCAACAACCCGCTCATGCCCACTAATTGAGTCACTGATATTGATGTCATGCCCATCGATTGGATTAGATGGACTTTGCTCTCTCCGTTGGCTCCCAAATTTGACTCTGCTTGATTTATCATACACTTTCTTGGTTAATCTGCAGCCTGTTTTCGAGTCTTGTTCACAGCTAAAAGTATTAAAATTGCAGGCATGTAAATATCTGACCGACTCATCACTTGAACCTCTGTACAAGGGGGGTGCTTTACCAACTCTTCAGGAGTTAGACTTGTCTTATGGAACTCTCTGTCAGTCTGCCATAGAAGAGCTTCTTTCTTGCTGCACTCACCTTACACGTGTGAGTTTGAATGGCTGTGTGAATATGCATGATTTGAACTGGGGGTACAGTCGTGGGCAGATTGCTGAGTTGCCTGGCATAGACGTCCTATCCATTGCAAGTTTCCGTGAGAATGTCCATGTGTCAAGTGAGCAACCCACACGATTACTGCAGAACCTCAACTGTGTGGGTTGTCCAAATATTAGGAAGGTTTTCATTCCATCAACAGCACATTGTTCCCATTTATTGTTTTTAAACCTTTCTCTGTCAGCTAATTTGAAGGAGGTTGATGTAGCTTGTCTCAACCTATGCTGGCTTAATTTAAGCAATTGTTCCTCTTTGGAAGTTTTGAAGCTAGAGTGTCCGAGATTGACCAGCCTATTCCTTCAGTCTTGCAATATTGATGAGGAAGCTGTTGAAGCTGCTATATCAAAATGCACTATGTTGGAGACGCTTGATGTTCGCTTTTGTCCAAAGATAAGCTCGATGAGCATGGGAAGATTACGTGCAGCATGTTCTAGTTTGAAGCGTATATTCAGCAGCTTGTCAACTTCATCAACGTGATCTAGGATCTTTAAAGTTTTCCGGTGCTTGTTCACTTGGGAGTGAAGGCACGTTTGGTAATAAACCTGGTTATTTCCTTATGTATTGTAAATGGTTAACTTTTTATCGTTGTTTGTTTGGCATATAGAAATCAGGATATCTTTATGTATTTTGCTACAATAAATAATTGTTGTTCTACTTTTGTAAATTTTACATTTCAATTTGTTGCATATTTTATTCCAAAGTGGTCTAACCTCTCTTGTGAAATAGGTATATCTGATCATTTATGTACGATCATTTATGCTGTAAATTTTGTACGATGCGTGTGGCATTGATATTTATATTTTTGCAATTTTCATGGGTACTATCTTATTAAATGTATGATAAAAAATTTAAAGGATAACCTCATCAATCATACTCGATGTGCCAGTTATGGCAATGACTACGGAGTAGTTCACCATGGACCATTGTTTTCTAAACCGATTATATTAGGTTGCCTGCAATAATTTTGTTAGTCTTCATCTACCGGAAATGACAATACACAACCCTAATTGCTCAATTACATGTTGGAACCAAAGAACCAGGGGTTGTGGCTGCAGGCCTGCAGCGTTTGAGCCATGAGCCACCATCAGAACCTTTCGACCACCACCTCTGCAACCAACCTACACTGCATAGGTCCATCAGTGAT

Protein Sequence

>Glyur000591s00018657.1
MKLWWCFLCFNEKEEEEKVVREEERTRIPESMKEEDLFGNEIVVSSAVPDGDDEAGVGNEEFTAAGAAIDGEHNWFRLHEEMARVLPLRRSEGESSSGGAAAAAAILSSESPAAEESRDSSHKRAKFYNECHFATPTSSSTVKYSVDFGDYDSSSLRPSNVTCYDDFTLMCTGEDSNGVKDGEGNEGDISKLEDPEVRMDFTDDLLHMVFSFLDHTNLCKAARVCKQWRSASAHEDFWRSLNFENRNISVEQFEDMCRRYPNATAMSISGPAIYLLVMKAISSLRNLEVLTLGRGQIADAFFLALPDCSMLKTLIINDSTLGNGIQEISIIHERLCHLELTKCRVMRIAVRCPQLEIMSLKRSNMAQVVLNCPLLHELDIGSCHKLPDAAIRAAATSCPQLVSLDMANCSCVSDETLREIAQTCANLSILNASYCPNISLESVRLPMLTVLLLHSCEGITSASMSAIAHSSMLEVLELDNCSLLTSVSLDLPRLRNIRLVHCRKFADLNLRAVMLSSIMVSNCPALHRINITSNSLQKLAVQKQDSLTSLALQCQSLQEVDLSECESLTSSICDVFSDGGGCPMLKSLVLDNCESLTSVRFISTSLVSLSLGGCRAITTLELTCPNLEKVILDGCDHLETASFCPVGLRSLNLGICPKLNILRIDASLMVSLELKGCGVLSEASLNCPLLTSLDASFCSQLTDDCLSATTRSCPLIESLILMSCPSIGLDGLCSLRWLPNLTLLDLSYTFLVNLQPVFESCSQLKVLKLQACKYLTDSSLEPLYKGGALPTLQELDLSYGTLCQSAIEELLSCCTHLTRVSLNGCVNMHDLNWGYSRGQIAELPGIDVLSIASFRENVHVSSEQPTRLLQNLNCVGCPNIRKVFIPSTAHCSHLLFLNLSLSANLKEVDVACLNLCWLNLSNCSSLEVLKLECPRLTSLFLQSCNIDEEAVEAAISKCTMLETLDVRFCPKISSMSMGRLRAACSSLKRIFSSLSTSST

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00591	16859	24459	+

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000591s00018657.1	PF12937.2	F-box-like	203	243	6.70E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	27.364
SRR1783600	control	27.525
SRR1783602	moderate drought stress	55.667
SRR1811619	moderate drought stress	55.647

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.028
DRR006520	Root Summer glycyrrhizin high producing strain	30.859
DRR006521	Root Winter glycyrrhizin high producing strain	57.750
DRR006522	Root Winter glycyrrhizin high producing strain	56.241
DRR006523	Root Summer glycyrrhizin low producing strain	34.930
DRR006524	Root Summer glycyrrhizin low producing strain	34.993
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.842
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.652

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	35.394
SRR2868004	Drought Stress (root)	43.310
SRR2967015	Control (root)	59.142

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.142
SRR9715740	Leaf	23.414
SRR9715741	Leaf	29.556
SRR9715739	Root	39.171
SRR9715742	Root	47.020
SRR9715743	Root	45.816

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.129
SRR8749028	MeJA induced 9h	34.081
SRR8749029	MeJA induced 9h	18.759
SRR8749030	Uninduced	13.352
SRR8749031	Uninduced	11.676
SRR8749032	Uninduced	18.391

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	48.969
SRR8400027	Control - Root	45.844