Gene detail

Gene detail information of Glyur000590s00022564

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G10660.1	2.00E-08	calmodulin-domain protein kinase cdpk isoform 2
NR	NP_001240212.1	1.49E-110	uncharacterized protein LOC100814189 [Glycine max]
Swissprot	tr\|Q42396\|CDPKC_ARATH	2.00E-06	Calcium-dependent protein kinase 12
trEMBL	tr\|C6TFQ5\|C6TFQ5_SOYBN	6.00E-111	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G00290.1}

Sequence

Transcript Sequence

>Glyur000590s00022564.1
AAAAAAAATAAGTGGAGATGATCCTGAGTCGTTTTGAGTAGAGCCGGAGAGGAGAGGAAACGATTAAGCCATTGATGAAATTGGTAACCAAACCGGCCCACTCGTGTACACCCCTAACCGGAGAGGAGAGGAAAGGAAACGATTAAGGAAGCNAGCACCGTCCAGAGGCAGTGAGAGAAGGGTGAGAAGAGAATGAATGAAACGGAGAAGAGGGATGTTGTACTACGGGAATGGTTCGACCGAGTTGACTCGGAGAAAAGTGGAAGCATAACAGCACTCCAACTCAAGACAGCTCTTGCTGTGGGCAACCTGGAATTTCCCCTCTCAGTTGTTGAGCAGATGATCAGGATGTACGACTTTGANAGGAATGGTACCATGAGCTTTGAAGAATTTGTTGCCCTCAACAAGTTCCTTCTTAAGGTTCAACATGCGTTTTCTGATTTAGAGAGGGGTCGTGGTTTTCTTGTACCTGATGACGTATTTGAGGCTTTGGTAAAAATTGGTTTCATGCTGGATTCTCCTGCTTTTTACTCTGTCTGCGAGAGCTTTGATCAAAGTAAAAATGGGAGATTTCGGCTGGATGACTTCATATCACTCTGTATATTCTTACAATCAGCTCGGAATCTGTTTAATTCATTTGATACAGCAAAACAAGGCAGGGTTACTCTTGATCTGAATCAGTTTGTCTATTGTACTGCCAATTGTAGAATATGATTCGACTATATGATGGCTTGTGAAGATGATTTACAAATACTTTTGTAAAATACCTCGGAGACATTCTCAGACCATTTAAATTGTGATGTATCAGATCAAAACAACATTTTGAGNTTGCATACTGGTTGCTAAATGCCTGCTAAAATACTGTAATTTTTTTCTTTTTGATATTGTAGTTTAAACTTAAATTGTTATAAATTTCAATTTCAATTATATTTGATGACTTGTGAAGATGATTGAATTGTAGATTTGTATAACATGTTTATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00590	87885	92094	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005509 calcium ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000590s00022564.1	PF13499.1	EF-hand_7	11	69	5.30E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.858
SRR1783600	control	8.018
SRR1783602	moderate drought stress	5.701
SRR1811619	moderate drought stress	5.753

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.410
DRR006520	Root Summer glycyrrhizin high producing strain	21.406
DRR006521	Root Winter glycyrrhizin high producing strain	23.134
DRR006522	Root Winter glycyrrhizin high producing strain	22.422
DRR006523	Root Summer glycyrrhizin low producing strain	25.504
DRR006524	Root Summer glycyrrhizin low producing strain	26.342
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.508
DRR006526	Leaf Summer glycyrrhizin high producing strain	22.451

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	46.371
SRR2868004	Drought Stress (root)	60.408
SRR2967015	Control (root)	48.464

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	41.817
SRR9715740	Leaf	51.852
SRR9715741	Leaf	47.109
SRR9715739	Root	9.047
SRR9715742	Root	11.678
SRR9715743	Root	12.665

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	52.799
SRR8749028	MeJA induced 9h	35.912
SRR8749029	MeJA induced 9h	52.804
SRR8749030	Uninduced	43.029
SRR8749031	Uninduced	50.394
SRR8749032	Uninduced	46.918

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	38.770
SRR8400027	Control - Root	42.512