Gene detail information of Glyur000590s00022562 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G76310.1 | 6.00E-114 | CYCLIN B2;4 |
| NR | KHN33647.1 | 0 | G2/mitotic-specific cyclin-1 [Glycine soja] |
| Swissprot | tr|Q9SFW6|CCB24_ARATH | 7.00E-158 | Cyclin-B2-4 |
| trEMBL | tr|K7KHB8|K7KHB8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G00230.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00590 | 82861 | 85251 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000590s00022562.1 | PF00134.18 | Cyclin_N | 135 | 260 | 2.30E-45 |
| Glyur000590s00022562.1 | PF02984.14 | Cyclin_C | 263 | 379 | 2.80E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.335 |
| SRR1783600 | control | 2.315 |
| SRR1783602 | moderate drought stress | 1.289 |
| SRR1811619 | moderate drought stress | 1.250 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.551 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.764 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.261 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.281 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.202 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.137 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.781 |
| SRR2868004 | Drought Stress (root) | 5.651 |
| SRR2967015 | Control (root) | 8.160 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.473 |
| SRR9715740 | Leaf | 0.134 |
| SRR9715741 | Leaf | 0.335 |
| SRR9715739 | Root | 0.619 |
| SRR9715742 | Root | 1.094 |
| SRR9715743 | Root | 0.826 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.516 |
| SRR8749028 | MeJA induced 9h | 18.988 |
| SRR8749029 | MeJA induced 9h | 18.745 |
| SRR8749030 | Uninduced | 0.264 |
| SRR8749031 | Uninduced | 0.288 |
| SRR8749032 | Uninduced | 3.300 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.727 |
| SRR8400027 | Control - Root | 7.876 |