Gene detail

Gene detail information of Glyur000590s00022558

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G49740.1	1.00E-104	PLC-like phosphodiesterases superfamily protein
NR	BAD12493.1	0	nodulin of unknown function [Lotus japonicus]
COG	YP_001869900.1	3.00E-17	glycoside hydrolase family protein [Nostoc punctiforme PCC 73102]
Swissprot	tr\|Q93XX5\|Y5713_ARATH	5.00E-112	PI-PLC X domain-containing protein At5g67130 (Precursor)
trEMBL	tr\|Q75PK4\|Q75PK4_LOTJA	0	Putative uncharacterized protein LjNUF {ECO:0000313\|EMBL:BAD12493.1}

Sequence

Transcript Sequence

>Glyur000590s00022558.1
TGAAATTTCATTAATTGCCAATATATCAATACATAATCTGGTGTTAGTAGCGTGCCTATGCAATTACATATTCTGGTGTTGTTTGTTGAAACAGAACCCAGAATAACCAATGGAGAACTACCTTCTCGTTGCCACCTTGATTAGCGCAAGTCTTGTATTTGGTTGTTACATACTTGTTCAGATTGGGGAAACATGCTCCCAAGACATCAATGACTGTGACTTGGGGCTGCAGTGCCTGGAGTGCAACTCAAGAAACCGGTGTACACGAATTCAAACTATAAGTCCTATTTCAAAGGTGATGGAGCTCCCATTCAATCGGTANTCATGGCTTACAACCCACAACTCATATGCGACGAGAGGAAAGAACTTTAGTACAAGTTCTCATATTTTGGGCATCATCAACCAGGAAGACTCCATTACAGATCAGCTTAATAATGGTGTGAGAGGATTAATGCTGGATATGCATGATTACAACAATGACATTTGGTTATGCCATGGACCATGCACCAAATTGACAGCCTTTCAACCTGCCATTAATGTTCTGCAAGAGATCAAGGCATTCCTGGTAGCATACCCAACCGAGATCATCACCATTTTCATTGAGGATTATGTAACGTCACCAAATGGTGTGAACAAGTTGTTTAATAAGGCTAGGTTGAGGAAATTCTGGTTTCCAGTATCTGAAATGCCCAAGAATGGCAGTGACTGGCCAACAGTCGAAAGAATGATAAGCAATAATCATAGGCTAATTGTGTTCACTTCAAATGCAGCTAGGGAGGCTTCTGAAGGCATTGCCTATGAGTGGAACTATGTTGTAGAAAATCAATATGGATATGGTGGGATGAGGGAAGGTTATTGTCTAAATAGAGCAGAATCATTTCCAATGAACACACCCTCAAAGTCATTGGTCCTAATGAACTACTTCAGAAATGTCAGAAATTCTGATCATGAAGCATGCAGGGATAACTCTTCTCCATTGATTAACATGATGCATATCTGCTTTAAAGCTGCGGGTAACCGATGGCCTAACTTCATTGCTGTTGACTTTTACAAGAGAGGAGATGGTGGGGGAGCCCCAGAAGCACTAGATGTGGCAAATCAATACTTGACTGGGGACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00590	46658	49052	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006629 lipid metabolic process

molecular_function
GO:0008081 phosphoric diester hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000590s00022558.1	PF00388.14	PI-PLC-X	64	169	6.90E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.096
DRR006520	Root Summer glycyrrhizin high producing strain	0.096
DRR006521	Root Winter glycyrrhizin high producing strain	33.685
DRR006522	Root Winter glycyrrhizin high producing strain	32.126
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.403
SRR2868004	Drought Stress (root)	0.082
SRR2967015	Control (root)	0.122

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.058
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.200
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.114
SRR8400027	Control - Root	0.353