Gene detail information of Glyur000590s00022549 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G34020.1 | 2.00E-142 | Class I glutamine amidotransferase-like superfamily protein |
| NR | XP_003607957.1 | 0 | Protein thiJ [Medicago truncatula] |
| COG | YP_006760414.1 | 1.00E-41 | DJ-1 family protein [Desulfobacula toluolica Tol2] |
| Swissprot | tr|Q8VY09|DJ1C_ARATH | 0 | Protein DJ-1 homolog C (Precursor) |
| trEMBL | tr|G7JL67|G7JL67_MEDTR | 0 | Class I glutamine amidotransferase superfamily protein {ECO:0000313|EMBL:AES90154.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00590 | 8831 | 12193 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000590s00022549.1 | PF01965.19 | DJ-1_PfpI | 93 | 229 | 1.20E-24 |
| Glyur000590s00022549.1 | PF01965.19 | DJ-1_PfpI | 297 | 432 | 1.00E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.182 |
| SRR1783600 | control | 5.148 |
| SRR1783602 | moderate drought stress | 4.909 |
| SRR1811619 | moderate drought stress | 4.938 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.597 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.489 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.819 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.707 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.655 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.713 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.295 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.430 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.886 |
| SRR2868004 | Drought Stress (root) | 3.856 |
| SRR2967015 | Control (root) | 3.980 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.492 |
| SRR9715740 | Leaf | 15.914 |
| SRR9715741 | Leaf | 4.802 |
| SRR9715739 | Root | 0.699 |
| SRR9715742 | Root | 1.298 |
| SRR9715743 | Root | 1.228 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.320 |
| SRR8749028 | MeJA induced 9h | 2.226 |
| SRR8749029 | MeJA induced 9h | 2.490 |
| SRR8749030 | Uninduced | 0.749 |
| SRR8749031 | Uninduced | 1.053 |
| SRR8749032 | Uninduced | 1.330 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.029 |
| SRR8400027 | Control - Root | 4.738 |