Gene detail

Gene detail information of Glyur000589s00031089

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G13635.2	3.00E-90	DNA glycosylase superfamily protein
NR	XP_004490266.1	4.42E-151	PREDICTED: probable GMP synthase [glutamine-hydrolyzing]-like [Cicer arietinum]
COG	YP_001832307.1	8.00E-48	DNA-3-methyladenine glycosylase I [Beijerinckia indica subsp. indica ATCC 9039]
trEMBL	tr\|C6TKE8\|C6TKE8_SOYBN	2.00E-150	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA0022S00480.1}

Sequence

Transcript Sequence

>Glyur000589s00031089.1
ATGAATACCAACCCATTTATATAACATTGGACTTTAATTTTCCTCATATCTTCCCCAGCATGTCTAAAGCAAATTCAAATGCAAATGCAAGAAGACATGCTATGGAGAAGAGAACAACAAGTAGTGTCCAAGAATCAAGGAAATTGAACCAACTATTTTTCCCCAAACACCTCAACAAAGTGTACCCAATTGGGTTACAGNGAAGCTCTTCATCTTCATCCTTATCTTCATTGTCATCATCATTGTCACAGAATTCAAATGACCCTTCTTTGACTCTTGTGGATGAAAACATCCCATTGGCACTGCATTTGATTTCACCACGTCAGAGAAGAGAACCATCACAGCTACAACAAAGTCCAAAAACCACCGAGCCTGGTGAATTGAAAAGATGCAACTGGATCACAAAGAACTGTGATAAGGCATACATAGAATTTCATGATGAGTGTTGGGGAGTTCCAGCTTATGATGACAAAAAATTGTTCGAGCTGCTTGCAATGTCAGGATTGCTGATAGATTACAACTGGACAGAAATTCTAAAAAGAAAGGAAGTTCTTAGACATGTTTTTGCCGGGTTTGATCCCAACATTGTTGCCAAAATGGGGGAGAAGGAAATCGTGGAGATAGCATCAAACAAAGCACTTCTGTTAGCCGATTGCAGAGTTAGGTGCATAATTGTGAGGGAATGTGGATCATTCAGTAGCTATATATGGGGTTATGTAAATCACAAGCCAGTGATTAACAGATACAGGTACCCAAGAGATGTTCCACTAAGGACACCAAAAGCTGAGGCCATTAGCAAGGACTTGGTAAAGCGTGGCTTTCGGTTTTTGGGTCCAGTCATAGTTTACTCTTTCATGCAAGCTGCAGGGTTGACCATTGATCATCTTGTCGATTGTTATAGGCACAATGAATGTGTAGGCCTAGCAGAAAGACCTTGGAAACATATTTAAGATACACACATTCATTTGCATGATTTTCTATTGGTTTTTTTTTTGTATTGACCAGCTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00589	126542	129146	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01246	tag	EC:3.2.2.20	Base excision repair	map03410

Gene Ontology

biological_process

GO:0006281 DNA repair

GO:0006284 base-excision repair

molecular_function

GO:0003824 catalytic activity

GO:0008725 DNA-3-methyladenine glycosylase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000589s00031089.1	PF03352.8	Adenine_glyco	113	283	1.20E-52

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.077
SRR1783600	control	1.116
SRR1783602	moderate drought stress	0.528
SRR1811619	moderate drought stress	0.551

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.765
DRR006520	Root Summer glycyrrhizin high producing strain	2.988
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.672
DRR006524	Root Summer glycyrrhizin low producing strain	1.939
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.705
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.931

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.211
SRR2868004	Drought Stress (root)	2.861
SRR2967015	Control (root)	2.919

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.956
SRR9715740	Leaf	0.889
SRR9715741	Leaf	0.589
SRR9715739	Root	0.024
SRR9715742	Root	1.168
SRR9715743	Root	0.797

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.674
SRR8400027	Control - Root	2.191