Gene detail

Gene detail information of Glyur000589s00031081

Functional Annotation

Database	Orthologs	E value	Annotation
NR	XP_003612420.1	1.03E-09	hypothetical protein MTR_5g024840 [Medicago truncatula]
trEMBL	tr\|A2Q568\|A2Q568_MEDTR	3.00E-07	Polynucleotidyl transferase, Ribonuclease H fold {ECO:0000313\|EMBL:ABN08768.1}

Sequence

Transcript Sequence

>Glyur000589s00031081.1
GTTAATTATTGGATCCCACACACTTTTTCTCTACTCTGTCTCTGTCCATACACACACAAAAGAAACGTCTGAGTCATTTTTTTATTTTTTTCCTCTTCCTTTGTTCACCGCCATGACCAAACCGGCTCCCAGCCCGCGGTTCCTACGCCTCTGTCTCTCCGCGCACCTCCACGCTTGCAAGATCATCACGTCATCTGCTTCCTCGCCGACATCTCCAGGAACGAGATGCTACATCGACACTGCTGGGCTGATAATATAAATGGGACTTTTACTTCTCTCTCTCTCTCAACCCATGTTAATGTNCGGTGAAGCTTTCTGGAAGGCCTTAGCCTCGCGAAGCACTGGCCGAATATGAAAATCAAGGAGGTCTGCGACTCTGCGTGCTACCTAAAGAGCCTCCCCTCCTCTCCAAGACGGCGGAGTATACCCCGAGAGACATCCTCTGGCTCCTCCTTTCCAGAATAGTTCTCTCTCCCATGACCCCTTCTCTCTTACAGTAAAAAAATACTGTTGAGTGAAATTTCTGTTCATTTTTTTATTTATCTGATTCTCTCTTTCTGCTTTTTGTTTTCCAGATGTTAGTTTGATGGGGGCAAATTGGAGAGCGCTCGCGGCTGCAGGCTGGCTCGCGACATAGCTTTGTTGCCGTGCTTCATGCAGAGTTGAACTCACTGGAAGACGATGGCCAAGTCCATTATGGGCCTAAATATATCATTTGGAGGTTGGTGACAGTGATAAGGAAAGAAAAGCTCGGGTATGGTTTCACTTCTAGCGCCAGTACGGAAGAAGTGGTTATTTTGCTTTTAATGCTTGGTAACATGACTTCCATTGTACCAGCTTTAAGCAAGGTAATTATGGCCTTTGGGGTGCGGTCCTTAGAGGCAAATATGGAAGGGACACCTTGCAACTGGGTGTCCCTATTGCAACCAGTGCCGACTGGGGTTTATAGAAGGCTATTGTGGCGCAAGAAGAGGCTTTCCATAAGTTTGAAATTTGGCTTGTGGGGAGTGGCAGTTCGATCCCAGCGTGGAGTCCCAACTGGATTGCCCCTGACCTGCGGTTGGATAGCCTTGGTGTCGCAATTCCGGAGGAGGATCGCGAGCATCTTGCCTATGAGTTGTTGTGTGGTTTGCACCTTAAAGTGCCAAGCAGGAACTGGAACTGCGTTGCGTGTGTGGCTTCATCTTGTTAAACCCACCCATCGTGCTGCCTTCTTACATGGCGAGATTCAGCAGNGGGTGGATCTAAACTTGGTCCATGGGTTTGGGGATGTGGATCTTCCGGAGTGGTCTCCGCTGTGGGCAACCACTTGCTACAAGTTGTGGGGGTGGCATAATAAAGAAGTCCACGTTGATGGCTTCTCCAGACCGTCGTTTCGTTGGCGTGATGTGCAACGGATGGCTATTACTGGAGATCAGCAGGGAAGCACCTCGGGTTGGAGCTTGCTGCAAGAAATCAGAAAGCTTCTTCGACTTGCGTGGGAGGTGAAGGTGGTTCATGTCTACCGCGAGGCAAACCGTTGTGCGGACGCCATGACTGCTCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00589	53301	59140	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000589s00031081.1	PF13456.1	RVT_3	209	243	7.00E-08
Glyur000589s00031081.2	PF13456.1	RVT_3	209	243	7.00E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.983
SRR1783600	control	1.102
SRR1783602	moderate drought stress	0.867
SRR1811619	moderate drought stress	0.710

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.934
DRR006520	Root Summer glycyrrhizin high producing strain	3.002
DRR006521	Root Winter glycyrrhizin high producing strain	5.479
DRR006522	Root Winter glycyrrhizin high producing strain	5.265
DRR006523	Root Summer glycyrrhizin low producing strain	4.853
DRR006524	Root Summer glycyrrhizin low producing strain	4.141
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.055
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.056

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.368
SRR2868004	Drought Stress (root)	2.995
SRR2967015	Control (root)	2.038

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.054
SRR9715740	Leaf	0.057
SRR9715741	Leaf	0.248
SRR9715739	Root	0.104
SRR9715742	Root	1.161
SRR9715743	Root	0.540

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.499
SRR8749028	MeJA induced 9h	0.796
SRR8749029	MeJA induced 9h	0.470
SRR8749030	Uninduced	0.232
SRR8749031	Uninduced	0.032
SRR8749032	Uninduced	0.085

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.139
SRR8400027	Control - Root	6.315