Gene detail information of Glyur000588s00020459 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G48140.1 | 7.00E-33 | B12D protein |
| NR | XP_003551877.1 | 4.02E-52 | PREDICTED: uncharacterized protein LOC100500344 [Glycine max] |
| trEMBL | tr|I1MYJ0|I1MYJ0_SOYBN | 1.00E-52 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G01340.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00588 | 127876 | 129607 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000588s00020459.1 | PF06522.6 | B12D | 6 | 86 | 9.50E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.631 |
| SRR1783600 | control | 17.785 |
| SRR1783602 | moderate drought stress | 20.111 |
| SRR1811619 | moderate drought stress | 20.372 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.943 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.403 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.791 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.513 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.669 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.163 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 61.433 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 61.091 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 142.393 |
| SRR2868004 | Drought Stress (root) | 122.946 |
| SRR2967015 | Control (root) | 73.893 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 157.409 |
| SRR9715740 | Leaf | 120.480 |
| SRR9715741 | Leaf | 195.435 |
| SRR9715739 | Root | 21.716 |
| SRR9715742 | Root | 21.681 |
| SRR9715743 | Root | 18.223 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 102.761 |
| SRR8749028 | MeJA induced 9h | 174.386 |
| SRR8749029 | MeJA induced 9h | 309.053 |
| SRR8749030 | Uninduced | 144.907 |
| SRR8749031 | Uninduced | 161.910 |
| SRR8749032 | Uninduced | 552.490 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 79.398 |
| SRR8400027 | Control - Root | 60.663 |