Gene detail information of Glyur000588s00020455 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G25980.1 | 7.00E-107 | DNA-binding HORMA family protein |
| NR | XP_003551878.1 | 1.40E-146 | PREDICTED: mitotic spindle checkpoint protein MAD2-like [Glycine max] |
| Swissprot | tr|Q9LU93|MAD2_ARATH | 2.00E-135 | Mitotic spindle checkpoint protein MAD2 {ECO:0000303|PubMed:19710914} |
| trEMBL | tr|I1MYJ1|I1MYJ1_SOYBN | 5.00E-147 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G01350.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00588 | 106578 | 108378 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000588s00020455.1 | PF02301.13 | HORMA | 12 | 191 | 2.30E-47 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.859 |
| SRR1783600 | control | 2.767 |
| SRR1783602 | moderate drought stress | 1.557 |
| SRR1811619 | moderate drought stress | 1.640 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.685 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.705 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.568 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.611 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.118 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.198 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.782 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.984 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 22.735 |
| SRR2868004 | Drought Stress (root) | 11.165 |
| SRR2967015 | Control (root) | 13.504 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.234 |
| SRR9715740 | Leaf | 0.141 |
| SRR9715741 | Leaf | 1.482 |
| SRR9715739 | Root | 2.064 |
| SRR9715742 | Root | 2.805 |
| SRR9715743 | Root | 1.426 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 25.139 |
| SRR8749028 | MeJA induced 9h | 8.613 |
| SRR8749029 | MeJA induced 9h | 11.339 |
| SRR8749030 | Uninduced | 0.377 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 1.082 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.285 |
| SRR8400027 | Control - Root | 14.267 |