Gene detail

Gene detail information of Glyur000588s00020453.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G13450.1	4.00E-153	Homeodomain-like superfamily protein
NR	XP_007163722.1	0	hypothetical protein PHAVU_001G258700g [Phaseolus vulgaris]
Swissprot	tr\|Q9FX53\|TGT1_ARATH	0	Trihelix transcription factor GT-1
trEMBL	tr\|V7D3B0\|V7D3B0_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW35716.1}

Sequence

Transcript Sequence

>Glyur000588s00020453.1
TCGACCCCAACCAACCTCATCCCCCACTTTACCCCGCAAAACAAAAAGGCTTTTACTTCACGCTGACAGATTACAGATACACAAACCCCTAAACTTCTCACCTCTCTCTATTGCATTTGCACATACCCTTTGCTTGCTACTTCAAAAATTTCAGTCACCAACTCTGTGAAGAAGAAGAAGAACGAGTCCTCACAATTACACACAATAGAAGAGAAGTAGAGAACCATTCTCCTTCTTCTCTTCCTCTTCCTCTTCCTCAATTGAACCCTCAAAACACATTCCTGGAGAACTAACCGATTCCGTTAATTCGCACAATTGAGCATGTATTTATCNGAAAAGCCTCGTCCCATCGATTTCTACAAAGAGGAAGACACGCGTGACATGATGGTGGAGGTTGTCACCAACGGCGACCTACCTCCACCGCCACCACCACCGCAGCACCACCACCAGCAACCGCCGCCGCCGGGGATGATACTCGGCGAGAGNAGCGGCGAGGACCCCGAGGTAGAGATCAAGGCGCCGAAGAAGCGNGCGGAGACGTGGGTGCAGGACGAGACGCGGAGCCTCATTGGTCTGAGGCGTGAGATGGACTCGCTGTTCAATACTTCCAAGTCGAATAAGCACCTTTGGGAGCAGATATCGGCGAAGATGAGGGAGAAGGGTTTCGATCGGTCGCCGACGATGTGCACCGACAAGTGGAGGAACCTGTTGAAGGAGTTTAAGAAGGCGAAGCACCAGGATAGAGGTGGGAGTGGCTCTGCTAAGATGTCGTATTACAAGGAGATTGATGAGATCCTTAGGGAGAGGAGCAAGTGTGTGCAGTATAAGAGCCCTACACCTACCTCCAAAGTTGATTCCTACATGCACTTTGCTGATAAAGGTATTGATGATACCAGCATTTCTTTTGGGCCTGTTGAAGCTACTGGAAGACCAACACTCAATCTTGAGAGATGTTTGGATCATGATGGACATCCTCTTGCCATTACCGCAGCTGATGCTGTTGCAGCAAATGGAGTCCCTCCTTGGAATTGGAGAGAAACTCCTGGAAATGGTGGGGAAGGTCAGTCATGTGGAAGGGTTATATCAGTCAAATGGGGCGATTATACAAGACGAATAGGTATTGATGGCACTCCAGAAGCCATCAAGGAGGCAATTAGGGCAGCTTTTAGGTTGAGAACTAAACGTGCATTTTGGTTGGAGGACGAGGAACAGATTATCAGAAGTATTGACCGTGACATGCCTATAGGAAATTACACTCTNCACCTTGATGAAGGAATGGCCATTAAAGTATGCCTCTATGATGAGCCTGACCATATCCCTGTGCATACCGAAGAGAAGATATTTTATACTGAAGATGATTACCGCGAATTTCTGGCACGCCGGGCTTGGACATGTCTAAGAGAATTTGACGGCTATAGAAATATTGACAATATGGATGATCTTCGACCTGGCGCCATATACCGTGGTGTGAGTTGAGAGCAGGTGCATATCTTCAGCTATTTCCATTAAAATGTCTAGAGAACTGTGGAGGGGACGACTGTTTAGATCTTTNGGTGATATATGTGCCGGCGCTAACCTGAAACTGTATTTGTTTAGTTTTTGATAATGCTGTTTATAGTCAGTCNATGATAGGAAGATGTACGATCCCCTCCACACAACTTGTCTGTAAATATGCATTTACATTGAGAACACATTATTGTTAAGATATTCTATAGGATCATTTTCATCACCTATTTTTATTCGTTTCTAGTTCTATGTAGTTCACCTGGACAGTGGCACATTTTTCTAGCACGCTGCCCAAGCAGGATCCTTCTGAACCATCGTAACTGATAACTTTAATCAGATGAAAGTTTTGTCCTCAGATTTCTATCCGGCAAACCTTTAACTGATTTTGTGTCTGAAGAGACGCAAGATCTGATACAAGTGTGTTCCTATTTAGCACTAGCGGATTAATGGCCTGAAAGCGGAATTGTGAAAACCTTGGTAAAAAGAGCTGTTGGATTTGCGAGAAAACGCAGTGCTAGTGGTTTGAGTACTAATTGTATTGCATTTGTTTTGATGGATTTGCCTGTCCACGAACTCATTGAAACGTTACAAGGATTAATNGATATTTACGTCGAAAGCTTTTAGAAGGGTGGAAAAGACGAGATATAGGCGCTGCATTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00588	97289	103141	+

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006351 transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000588s00020453.1	PF13837.1	Myb_DNA-bind_4	73	158	1.20E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.542
SRR1783600	control	13.684
SRR1783602	moderate drought stress	13.342
SRR1811619	moderate drought stress	13.235

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.958
DRR006520	Root Summer glycyrrhizin high producing strain	16.616
DRR006521	Root Winter glycyrrhizin high producing strain	20.431
DRR006522	Root Winter glycyrrhizin high producing strain	19.769
DRR006523	Root Summer glycyrrhizin low producing strain	14.485
DRR006524	Root Summer glycyrrhizin low producing strain	14.574
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.998
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.865

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.083
SRR2868004	Drought Stress (root)	11.814
SRR2967015	Control (root)	13.130

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.049
SRR9715740	Leaf	7.994
SRR9715741	Leaf	8.478
SRR9715739	Root	7.079
SRR9715742	Root	7.673
SRR9715743	Root	7.476

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.911
SRR8749028	MeJA induced 9h	18.325
SRR8749029	MeJA induced 9h	13.790
SRR8749030	Uninduced	12.935
SRR8749031	Uninduced	10.106
SRR8749032	Uninduced	8.198

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.089
SRR8400027	Control - Root	15.632