Gene detail

Gene detail information of Glyur000588s00020446

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G26020.2	Protein phosphatase 2A regulatory B subunit family protein
NR	XP_003601840.1	Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform [Medicago truncatula]
Swissprot	tr\|Q9LU89\|2A5N_ARATH	Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform
trEMBL	tr\|G7J2I4\|G7J2I4_MEDTR	Protein phosphatase 2A regulatory B subunit family protein {ECO:0000313\|EMBL:AES72091.1}

Sequence

Transcript Sequence

>Glyur000588s00020446.1
GTTATATTTTAATTTTAATTTTATATTCTCTACTACAGATAGTTCGAAACTCTCTTTTATTTACTTTTTTTTATGAAAACGAAAAATATATATATTTAATATTTGTCAAAAAAATAAAAGGAAAAAAAGGGTAATCTGCAGAACATTCTTCGTCTTCCCTCTCGCGTTTCAAGCCGAACAACGGAGAAGATTGAGCTTTTTCTGATATCTGAATTCTGAACCTCTTGGTTTCTGTGTGTTTGTGATTATTCACGCTGATCTCTGTTCCTCCACCACCAGTGTTTGTGATCGCAAAGGTTCGGTTTTTTCACAAACAGAGTCCGAATCATCGAATTGGGGTTATGCTCCATCACTATGGGTAGAATTGGTGAACTGGGTTTTCTTCTTCTACCCAGATAAGCAAAAAGCAAAAGGGGTTTGCTCTTTTTTCTCTCTTATTCCCACACCACCACCACCACCACCACCACCACCATCATCATCATCAGCCAAGTGCAGCAAAAACAACAACATTTGTGTCCGGTCGTACAAGGAAGATCGTGTCGTGAATTTAACATAGTTTTCACTTTTCAGGGATCGTTTGTTTTTTTTTTTTTTCCAGAATCGAAGAAAAGGGTGTGAGGTGTTTCGTTTGATGAATTATGTTCAAAAAGGTATTCAGTAAACTTCCTAAAAAGTCATCAAAAGGTTCTGAGCATCGTGAACACGATGGAACTGCAAAAAGCCATGGCGGCGTTACCACCACCCCGAAAAGCAGTGATATTGTTACCCCAGGTAGCAGCAAACCTGGAAATTCTCCTCCTTTGAATGCGGGTCAGCAACATCATCATCATGGTAACAACAGAGCTCCATTACCATTGNGTAGTGTGGATGAGAATCTGAATCCCAATGGGAATTTCAATTCTTATGAAGCATTGCCATCATTAAGGGATGCTCCCAATTCTGAGAAACCTAGCTTGTTCATAAAGAAGCTCAAGATGTGTAGTGCGGTGTTTGACTTCACTGACCCCACAAAACACCTCAAGGAGAAGGAAATTAAGAGACAGGCCTTGGTGGAACTGGTGGATTATGTGTCTTCTGCTAATGCTAAGTTCACAGAGAATNTGATGCAAGAGGTTGTGAGGATGGTGTCTGCGAATATATTCAGGACACTCGGTCCTCAACCGCGTGAGAACAAGATCATCGATGGAATTGATGTGGAGGAGGAGGAGCCTTCGATGGATCCNGCATGGCCGCATTTGCAGATTGTGTATGAGCTTTTCCTGAGATTTGTGGCATCACCTGAACTGGATGCAAAGTTGGCTAAGAGGTTCATTGATCAGTCCTTTGTGTTGAGGCTGCTGGATTTGTTTGACTCTGAGGATCCTAGAGAAAGGGAGTTNTTGAAGATGACCCTGCACCGCATCTATGGCAAGTTCATGGCGCATCGCCCTTTCATCAGGAAAGCAGTCAATAACANCTTTTTGAATTTCATTTTTGAGACCGAGAAGCATAATGGGATTGCTGAGTTCTTGGAGATTCTGGGGAGTATCATTAATGGTTTTGCACTGCCATTGAAAGAAGAGCATAAGCTGTTTCTCGTTCGGATATTGATTCCGTTGCACAAACCGAAGTGCTTGGCAATGTATCATCAGCAGTTATCTTATTGCATTAGCCAATTTGTGGAGAAAGACTGCAAGCTTGCTGACACAATTATTAGGGGGTTATTGAAGTACTGGCCAATAACAAATAGCACAAAGGAAGTTATGTTCCTTAGTGAGTTGGAAGAAGTCTTGGAAGCAACTCAGCCTCCGGAATTCCAGCGTTGTATGGTGCNATTGTTTCGCCGTGTTGCCCGTTGTTTGAATAGCCCCCATTTTCAGGTGGCGGAAAGAGCTTTGTTCCTGTGGAACAATGATCACGTGGTGAACCTAATCAAACAAAACCGCAAAGTGATACTGCCCATCATCTTCCCCGCATTGGAAAGAAACTCAAGAAGTCATTGGAATCAGGCTGTCCATAGTTTGACTTTAAATGTTCGCAAGATTTTTCACGATCTTGATCCCGATCTATATAGAGAATGCTTGCAAAAGTATGAGCAAGATGAATCAAAGGAAGGAGAAGTCGCAGCAGGACGTGAAGCCACTTGGAAACGCATGGAGGAGATCGCCGCGAAGAAAGCTGCAAGTAGCGAAGCTGTGCTTATTGGTAAAGCACTCCCTCGCAACTCTGCAGGTTAGATAGAACTGGAATGTGTATTCTGCTCCAATAGCTTCATTTTTTAAGAATCTTAATACTTGATAGTATTTTTTTTTGGCAAGTGATGTGTTGGCCAAGAAGGGCAATTTATTGAATACTTTCAGATTCACTTCCTATAGGAATTGAAGGCTGTAATTAGTAGTGGGTAATCTNATATGCACGACAACGTTTTCTCAAAGCTTAACTAGCATATAGCATATACTTTTGTAGCATGAGTTGACATTTGGGCACTTTTCCTTTGAATGGATTTCCAATGAACATTTCGTTCAAGACTAAAAGTCTAAAAAACAAAGACCAAATGAAAAATNGAGACGACCATTGTAGCAACAAAACTGTGGGCTGCAGAGCCTTTTGGAGTTTACCACGCAAGAGAATAGTTAGAAAAATTTGTGAAGCAAGAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00588	53683	59517	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

cellular_component
GO:0000159 protein phosphatase type 2A complex

molecular_function

GO:0005488 binding

GO:0008601 protein phosphatase type 2A regulator activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000588s00020446.1	PF01603.15	B56	92	504	6.10E-177

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.012
SRR1783600	control	12.928
SRR1783602	moderate drought stress	8.787
SRR1811619	moderate drought stress	8.642

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.551
DRR006520	Root Summer glycyrrhizin high producing strain	19.260
DRR006521	Root Winter glycyrrhizin high producing strain	17.830
DRR006522	Root Winter glycyrrhizin high producing strain	17.267
DRR006523	Root Summer glycyrrhizin low producing strain	35.690
DRR006524	Root Summer glycyrrhizin low producing strain	35.432
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.667
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.283

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.530
SRR2868004	Drought Stress (root)	28.735
SRR2967015	Control (root)	18.680

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	34.503
SRR9715740	Leaf	26.511
SRR9715741	Leaf	52.954
SRR9715739	Root	9.504
SRR9715742	Root	34.967
SRR9715743	Root	32.263

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.362
SRR8749028	MeJA induced 9h	52.439
SRR8749029	MeJA induced 9h	31.646
SRR8749030	Uninduced	40.493
SRR8749031	Uninduced	48.313
SRR8749032	Uninduced	30.625

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.717
SRR8400027	Control - Root	19.918