Gene detail

Gene detail information of Glyur000588s00020443

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G27670.1	2.00E-34	heat shock protein 21
NR	XP_003601844.1	5.99E-97	Chloroplast small heat shock protein [Medicago truncatula]
COG	YP_617116.1	3.00E-15	heat shock protein Hsp20 [Sphingopyxis alaskensis RB2256]
Swissprot	tr\|P09886\|HS21C_PEA	1.00E-41	Small heat shock protein, chloroplastic (Precursor)
trEMBL	tr\|G7J2I8\|G7J2I8_MEDTR	2.00E-97	Localized small heat shock protein {ECO:0000313\|EMBL:AES72095.1}

Sequence

Transcript Sequence

>Glyur000588s00020443.1
CTTACCTGAACTGATATTTGCGATAAGATATAAGATGTCTGGTTCTGGAAAAATCTAGAAACTGAAACGGTAAAATCAAGCTCACAAGTCACAAGTTCCCACCGACNCGACTCGTGGTGCCAACTGAGCACTAATCCATGTCGTGCTTTCCAGAATCCTCTATCACTCCTTCCCAAAACTTCTATAAACCCCTTTCCACAACACTCATCTCTCTACTTCATCAACACTCACAACTTTTCTTCTGATTAATCATTAANATTGGTATCTATCTATAGACACCTAGCTCACTAAACACAGAATCTACTAATGGCACAAGCTTTATCCTCTAATTTGGGTCTTAACCTTGCCATGCTTTCCAAGAGTTCATCGACTCCCTCAGGAGTACCAAGACCAACCCATTTGAAGCCCCTCAGGGCCATGGCAGGGGATCACGCAAGAGNAAAACTTGACCCTGTTTCAAGCCACAACAAGCACCAGCCCCAGCCCAAAAGAAGAGTTGCCCCTGCTTCACCCATAGGGTTGTGGGATCGATTTCCTACAGCAAGGACAGTGCAAGAGATGATGGAGACAATGGAGAGGATAATGGAAGACCCATTTGCAATGAGCACAATGGAGTGGCCTTCATCACCTCTTCCGAGTGAAGGGGTAGGTGGGTATAGGAGGAGGGGAAGGACACCATGGGAGATCAAAGAGGGAGAAGGGGAATACAAGATGAGGTTTGATATGCCTGGGATGAACAAGGAGGATGTCAAAGTGTGGGTGGAGGAGAAGATGCTTGTGGTCAAAGCTGAGAAAAAGGCACACATGAATGATGATGATGATGGAGAAGTTTGGTCTGCTAAGAGCTATGGTAGGTATAGTAGTAGGATTGCTTTGCCTGAGAATGTGCAGCTTGAGAATATTAAGGCTGAGGTTAAGGATGGTGTTCTCTACATAACCATTCCTAAGGCTACTAGCTACTCATCAAACATCCTTGATATCCATGTTCAATGATTGGATGTTATTTTTTGTGGTATTTGTTATTTAGTTGTTTGCAAATTAATATATGAACTGAGATAGACCTTTTCTCCTTTTTTGAAAGAAAAAATTGTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00588	36417	38006	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000588s00020443.1	PF00011.16	HSP20	126	219	2.60E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.161
SRR1783600	control	2.272
SRR1783602	moderate drought stress	1.477
SRR1811619	moderate drought stress	1.336

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.753
DRR006520	Root Summer glycyrrhizin high producing strain	3.483
DRR006521	Root Winter glycyrrhizin high producing strain	2.744
DRR006522	Root Winter glycyrrhizin high producing strain	2.487
DRR006523	Root Summer glycyrrhizin low producing strain	1.615
DRR006524	Root Summer glycyrrhizin low producing strain	1.698
DRR006525	Leaf Summer glycyrrhizin high producing strain	72.614
DRR006526	Leaf Summer glycyrrhizin high producing strain	72.321

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.689
SRR2868004	Drought Stress (root)	0.982
SRR2967015	Control (root)	0.417

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	29.007
SRR9715740	Leaf	37.312
SRR9715741	Leaf	18.995
SRR9715739	Root	0.911
SRR9715742	Root	1.597
SRR9715743	Root	0.969

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.631
SRR8749028	MeJA induced 9h	1.861
SRR8749029	MeJA induced 9h	0.219
SRR8749030	Uninduced	0.347
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	1.320

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.250
SRR8400027	Control - Root	3.874