Gene detail

Gene detail information of Glyur000588s00020440.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G67710.1	2.00E-90	response regulator 11
NR	KHN24104.1	0	Two-component response regulator ARR11 [Glycine soja]
COG	YP_462742.1	9.00E-17	sigma-54-dependent transcriptional regulator [Syntrophus aciditrophicus SB]
Swissprot	tr\|Q9FXD6\|ARR11_ARATH	5.00E-116	Two-component response regulator ARR11
trEMBL	tr\|G7J2J3\|G7J2J3_MEDTR	0	Two-component response regulator ARR2-like protein {ECO:0000313\|EMBL:AES72100.1}

Sequence

Transcript Sequence

>Glyur000588s00020440.1
GATATATACTAACATACGCCACAGGGACAGTTAGTTATCCGGCGCCAATATTCGTTGGTTCTCTCTCTCTCTCTCTCTATTTCTCTCTGTTGTCTTTCTTTCCTTATATTTTTTTTGTTACTGAGTGCTTATAACCCAACAAACAAAGCCAACCCTTTTTTGAAACTCACACAAACAGAACAGAAAGCAGTGATCTTTGTGAGTCTCTACACAAAAAACATGGACAATGGTTACTTCCCTTCCCCTCGTCGTGATTTCCCTGCAGGCCTGCGAGTTCTAGTTGTGGATGATGATCCAACATGGCTCAAGATCCTTGAAAAGATGCTCAAGAAGTGCAACTATGAAGTGACTACATGTTGCTTAGCAAGACATGCTCTAAACCTGCTCCGCGAAAGGAAGGATGGATATGATATAGTGATCAGCGATGTAAACATGCCTGACATGGATGGTTTCAAACTTCTCGAGCATGTTGGACTTGAGATGGATCTTCCTGTCATTATGATGTCTGTGGATGGAGAAACAAGCCGGGTGATGAAAGGCGTCCAGCATGGAGCATGTGATTATCTCCTCAAGCCTATAAGGATGAAAGAACTGCGGAATATATGGCAACATGTCTTTAGGAAAAGGATACACGAGGCTAGAGAATTTGAAAGTTTTGAGAGTTTTGAGAGCAGCATTCACTTGATGAGAAATGGATCAGAGCTGTCCGATGAGGCGAACCTGTTTGCTGTAGACGATATGACTTCGACGAAGAAGAGAAAAGATGTGGATAANAAACATGACGACAAAGAGTTTCTGGATTCATCTTCCACAAAGAAAGCTAGAGTAGTTTGGTCTGTGGATCTTCATCAGAAGTTTGTTAAAGCAGTGAATCAGATTGGATTTGATAAAGTTGGGCCCAAGAGAATACTAGATTTGATGAATGTTCCATGGCTGACTAGAGAGAATGTTGCCAGCCACTTGCAGAAATCTTCCACAAGTGGAATGAAGCATTCTGATTTACCTTCAAAAGATGAAGGAAGCTTTGGTTTTCAGAACTCAGCAAACAAGCAACAACCTGATGTTTCCATTGACAGCTACAACTATTCAGATGGAACCTTACAACATCGGAATGCAGCAACTCAAAGTCATGAAGGTAATAATCCCAAGGGAATTGTTTCGCAGTCCACCGCGGCAGAAAAAGCAAGAGCTTTGACTGGTAACACTAACATCACTGATACAAAGGTGACAGAGAGTTTAAGGATGGGACTTAATCAACCTTTNGTCCCTCTTGATTCAGAAGGAAACCACTCAGTGTTTGATTGCACCATGTCAACACAATATTCTTGGACCGAAGTTCCAGAAATACCGCTCAAAGAAGAACACAAGTCACTTGTTCATCTAGAGGANAGCTTTAGCCAATTGCCCTTACATGGTAAGCAGCATCACATCCAAGTTGATCATCAATCACAGTCAATTGCTTCAATTAGTTCCACTCCCTCTNTAACTGAGGAAGAGGTTGCTGCTTGCATAGAAACAAAACCTTTGTTTGCTGATTACAAGAGAGACTACTCCAGTTCTGTGAGTTCAATCAGAAGTGCAGTTGACACCTTTCCTTTTCAACCCGGAAGCCTCGTGATGAACGATCAACCTTCAGAACCCATTTCCACTCCAAATCTGGGATTGAAAACACAGGGATCCAACCTCAGTTGCATTTCTGATCTGGAGTTTTACCAAAGAAACCTGCTTTTGGGAGGTGAAGCAGCAGCTTCTGCACCTTTGGATGAGGACTTATATTTCTATTGGCTACAAGGGGAACGCTGTAATATGAACTTGGTGGGTCTGCAGAATGTAGGGATGCCCGAGTATTATGATCCAGGGCTTATCACAGAAGTTCCAACCCACTTATATGATTCAGCAGATTATTCAGTGATGGATCAAGGTCTATTCATAGCATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00588	24669	28968	+

Gene family

Gene family	subfamily
Transcription Factors Family	ARR-B

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0000160 phosphorelay signal transduction system

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000588s00020440.1	PF00072.19	Response_reg	19	127	2.40E-23
Glyur000588s00020440.1	PF00249.26	Myb_DNA-binding	202	250	3.20E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.112
SRR1783600	control	13.114
SRR1783602	moderate drought stress	9.678
SRR1811619	moderate drought stress	9.678

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.212
DRR006520	Root Summer glycyrrhizin high producing strain	17.028
DRR006521	Root Winter glycyrrhizin high producing strain	5.808
DRR006522	Root Winter glycyrrhizin high producing strain	5.755
DRR006523	Root Summer glycyrrhizin low producing strain	13.647
DRR006524	Root Summer glycyrrhizin low producing strain	12.777
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.966
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.951

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.798
SRR2868004	Drought Stress (root)	26.322
SRR2967015	Control (root)	27.833

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.574
SRR9715740	Leaf	0.625
SRR9715741	Leaf	0.877
SRR9715739	Root	1.305
SRR9715742	Root	5.092
SRR9715743	Root	3.808

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.221
SRR8749028	MeJA induced 9h	0.090
SRR8749029	MeJA induced 9h	0.090
SRR8749030	Uninduced	0.254
SRR8749031	Uninduced	0.135
SRR8749032	Uninduced	0.032

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.729
SRR8400027	Control - Root	9.593