Gene detail

Gene detail information of Glyur000587s00026622

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G33160.1	9.00E-117	F-box family protein
NR	NP_001240018.1	0	uncharacterized protein LOC100801096 [Glycine max]
Swissprot	tr\|Q9SMZ3\|FBX13_ARATH	8.00E-142	F-box only protein 13
trEMBL	tr\|C6TD64\|C6TD64_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G33640.1}

Sequence

Transcript Sequence

>Glyur000587s00026622.1
CAAAAGAAAGAGATCCCGGGAAGCTTCCTACCTCTTGAGCTCGCTCGCTTTCCCTTTTTCCCTTTTTCAGGATTTCCTGCTTCCAAAGCCCATTTTAAACACCCAATCCAACCCCATTTTCTATTGTCTCTCTGTTGTGTTCTTCAGCAACACACTCTCACCCACTCACCCACCCACCGTGTGTTTTGGTTATTGCAGCAGCTTCAGTTCTTTCAGTTTTCTCCAACTTTGTGGTCAATGGAGCATAGTTTGAAAAGAAAGTCCCCAGAAAATGAAGACCATCTACTCACCAACAGCTTTTCACTGGATGACCTAAATGAAGATCTCTTCGAAAGGGTACTTTCATGGCTACCGACTTCCACTTTCTTCCGCCTTACTTCGGTGTGCAAAAGATGGAAATCAGCTGCTGCTTCTGTGAGTTTCAAGCTTGCCTGCTCAGACATTCCTTCGCGGGATCCTTGGTTTTTGATGGTTGCTCCCAGCCTCAACCAATCTATTATCTTTGACTCTGCTGAAAACACTTGGAAAAGACTCAATCATCCGCGTCTACTGATTGAAGATTCCAACAGAAGTTGCATGCCTGTTGCAGCCTCCAGTGGCCTGGTTTGCTACCGCACATTGTTGGGAAACTTCATCGTGTGCAATCCCGTGACCGGATCCTGTAGTGAACTCCCTCCATTGCATCTTGCCTCAGAAAACCAATCTCTCAATGCCGTTGTAATGAGTACAACTTTCAAAGACCAGATATCCTACAAGATTGTGTTAGTCTTTGGTGAACCCCCAAATCTTTTGTTCAAAGTCTACAACTCAAGCTCTGGCTGTTGGGAAGATGAGACTGCTCTTCGGAGGAAGGTTGATGGTAATTCCATGGATTGCGATTCAACCGACGACAACGTTGTGTACTTCCTTAGCAAGGCTGGGAATGTGGTGGCAAGTAGCATGCAGAGAAGCCCATCCAAGCAATATTCATCGGTCGTTACGAACAAGGATGGTCAAGAGATAGTCTATTTTCTTAGCTCTTCAGGGACAGTAGTAGCTTGCAATTTGACATGCACTTGCTTCCTTGAGTACCCCAGGTTGTTGCCTGTTTTCAGTGAGTACTCCATTGATGTTGTGGAGTGCAATGGTGAGATGTTAGTTGTTTTGTTATCAGAGTTCTTGGAAAGTGCTAGTCTTAGGGTGTGGAAATACGAAGAGGCTAATCGATGCTGGCAACAGATCGCGGCAATGCCTGCGGCAATGTCTCATGAGTGGTATGGAAAGAAGGCAGATATTAACTGTGTTGGAGCTGGGGATCGGATATTTATATGCTTGAACTCCCCTGAGCTATGTACTTATATTCTGTGTGATTTGGTGACCAACAATTGGGTTGAATTGCCAAAATGTTGCATAAATGGGGAAGTCATGGAGTTTATGTCTGCCTTTTCATTTGAGCCCAGGATAGAGGCTTCTGTATGACAGTAAAATGCCCCTGCCCTGGTGGTATCTTGATTTTTGTTGTTAGCTTAAATTTTCTTTTCACATGTACTTGAAAATAGAGGTGGAAGCTAACCATATGATTGATTGCTGACAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00587	69329	71451	+

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000587s00026622.1	PF00646.28	F-box	100	142	3.60E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.098
SRR1783600	control	3.161
SRR1783602	moderate drought stress	3.478
SRR1811619	moderate drought stress	3.618

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.911
DRR006520	Root Summer glycyrrhizin high producing strain	9.749
DRR006521	Root Winter glycyrrhizin high producing strain	1.179
DRR006522	Root Winter glycyrrhizin high producing strain	1.175
DRR006523	Root Summer glycyrrhizin low producing strain	9.219
DRR006524	Root Summer glycyrrhizin low producing strain	9.183
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.183
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.337

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.666
SRR2868004	Drought Stress (root)	6.830
SRR2967015	Control (root)	15.739

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.091
SRR9715740	Leaf	3.108
SRR9715741	Leaf	2.731
SRR9715739	Root	6.405
SRR9715742	Root	6.177
SRR9715743	Root	6.708

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.885
SRR8749028	MeJA induced 9h	3.480
SRR8749029	MeJA induced 9h	1.725
SRR8749030	Uninduced	0.554
SRR8749031	Uninduced	0.243
SRR8749032	Uninduced	0.729

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.769
SRR8400027	Control - Root	9.771