Gene detail

Gene detail information of Glyur000587s00026621.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G24640.1	ubiquitin-specific protease 19
NR	XP_004498826.1	PREDICTED: ubiquitin carboxyl-terminal hydrolase 19-like [Cicer arietinum]
Swissprot	tr\|Q9SJA1\|UBP19_ARATH	Ubiquitin carboxyl-terminal hydrolase 19
trEMBL	tr\|I1MX24\|I1MX24_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G33650.1}

Sequence

Transcript Sequence

>Glyur000587s00026621.1
GTTCCTGTCCCGGATTTATAGAACAGAAGAATAGAAAGTAGGGAGACATCACAGAAGGAGTAAGCAAGCAAGGAAGAAAGAGTGATTGAATTGAGATTGGAAGGGCCGATAGAAGAAAACCCTAAATTGAGGATGTGATCGATGAAAAACCCTAGAATCGAAGGCACATCGACGTAGATGCTTGTTATCGCCGGGGTGTCGTGGGATCTGAATTGGTTCCTGCAATTGATATTCTCCGCTCTGGTTGTGGCCGTTGGGCTGCACACCTTGGTGAAGAACACTGCCTCCAGGTACTTCGAGGTCGACGCCAATTTCGAAGGGGACCACCACCCTCCCTCCGCCCCAATGCCCGGCGTTCTCGCTGCCGCCGATGACCACCCTATCTGCGCCGTCTGCGCTTCCCACGCCACCAAGAAGTGCTCCCGCTGCAAAGCCGTCAGATACTGCTCGTTTGAATGTCAACAGTCACATTGGAAGTCCGGGCATAAGGCGAAATGCAAGGATTTTCGTGACACTGGTGCTTTAAACTCGGCTCAAAACGGGGCTACTAATCGCGGGTTTAAGGCTTCTGCAGTTGGGGGTAAAAGCCCATCTTCAATTGCGCTGGTACCTGGCTGTGGAACCTCCAGGCCAATCAAGCAGCCTAAAGATGTAATTTTCTTTTATGAAAGTATTGACAAGTTCACATCAGGTTTTGCTTACCCCAGGTATTACATGTTTTTTCCTTTTCAGGTTCTTTTTCCTTACAATGAATTTGTTAAATTTTTTAACTGGGACAAGCTAGGATTTCCTCCTTGTGGACTCTTGAATTGTGGAAACAGTTGCTTCGCAAATGTGGTTCTTCAGTGTCTCTCATTCACAAGGCCACTTGTTGCCTTCTTGTTGGAGAAGGGCCACCGAGGAGAATGCAGCTGTAGTGATTGGTGTTTTCTATGTGAATTTGAAAATCATATTGAAAGAACGAGGCAAAGCTCACAGGCATTTTCTCCGATGAATATTCTATCTCGTTTGCCTAATATTGGTGGTACTCTGGGTTATGGAAGACAAGAGGATGCTCATGAGTTCATGAGGTTTTCAATTGATGCTATGCAATCCGTTTGTCTTGATGAATTTGGTGGAGAAAAAGCTGTCCCTCCTAACCTTCAGGAGACAACCATTATTCAACACATTTTTGGTGGTCGCCTTCAATCTGAGGTGATTTGCACAAAGTGTGATAAGATTTCAAATCAGTATGAAAATATGATGGACTTGACAGTTGAGATTCATGGAGATGCTGCCTCGCTGGAGGAATGTCTAGATCAGTTTACTGTCAAAGAGTGGCTTGATGGGGAAAACAAGTATAAATGTGAGGGGTGCAAGGACTATGTCAAGGCGTGGAAACGTCTTACTGTGAAATGTGCTCCAAATATTCTAACAATTGCCTTAAAAAGATTTCAGAGTGGGAGATTTGGAAAACTTAATAAGAGAGTAGCCTTCCCTGAGACTTTAAATCTCAGCCCTTACATGAGTGAAGCTGGAGATGGATCTGATATCTATAAGTTATATGCTGTTGTTGTCCATATTGATATGCTAAATGCTTCATTTTTTGGTCATTACATCTGCTACATCAAGGATTTCCGGGGAAACTGGTATAGGATTGATGACTCGAAGGTTGTGAGTGTGGAATTGGAGGAGGTACTTTCTCAGGGAGCATACATGCTGTTATATAGCAGGTGTAGTGCCCGGCCGTCAAGCCTTCAAATTCAAACTACTGAATCTTCAGGGATGCAAACAGTGGAAGTGGAGCCTGTCCATACTGAACAAGCTGAATGCCTCTCGAATATGAAGAGTGTGACCTGCAGTATAGGTTGTGAGGTTTCACCATCTGATATTAGTCCAGAATTGAAGGTTTCTTCTGACAATGGATACGAGTCTTCCATTGGATTGGACTCAGAAGCCAAAAGAGAGCAGTCTGAGGATATGGACATGACCGATGTTGAGTCAACTGGTATTGCTAATGAGGTTTCTTGTAGTGCTGTTGAATCTTCTTATATGCCTATTTCTCACGCTGTCAAAGATTTGGGGGATGTAGATATGGGAAGATCTTTAGATGAGACTTCGGGCTGCACACAAGAGCAAGATGATACCGATATGGATATATCTGGACCTTCTATGGTTTTACCAAATGACTTTTCTTTATTGGATAAGCATTCATCTGCTTCAGTGGATTATGGAAACCTGAAAGAAGATGCAGGACATATAGATGTGGTTAAGTGCAAGTCGTTCACATCTAAAGATGATGCATATTATGGCAATGGATATGTCAGTGCAAACAAATCTGCTATTCCACTTGAAGATGCTGGTACACTATTTTCTGGTGTTGGTTCTTTTCCCACTGAAAGTGACAAAGGAAATGGAACTAAGAAAGTGGAAATATCAGCGGACAAATTAATAATGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00587	62564	67671	+

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006511 ubiquitin-dependent protein catabolic process

molecular_function
GO:0036459 thiol-dependent ubiquitinyl hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000587s00026621.1	PF01753.13	zf-MYND	70	107	2.30E-09
Glyur000587s00026621.1	PF00443.24	UCH	206	510	8.70E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.896
SRR1783600	control	4.926
SRR1783602	moderate drought stress	5.042
SRR1811619	moderate drought stress	4.883

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.637
DRR006520	Root Summer glycyrrhizin high producing strain	7.788
DRR006521	Root Winter glycyrrhizin high producing strain	9.200
DRR006522	Root Winter glycyrrhizin high producing strain	8.887
DRR006523	Root Summer glycyrrhizin low producing strain	9.981
DRR006524	Root Summer glycyrrhizin low producing strain	9.692
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.340
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.386

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.056
SRR2868004	Drought Stress (root)	19.222
SRR2967015	Control (root)	20.904

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.788
SRR9715740	Leaf	12.409
SRR9715741	Leaf	13.869
SRR9715739	Root	2.530
SRR9715742	Root	9.712
SRR9715743	Root	8.350

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.907
SRR8749028	MeJA induced 9h	7.183
SRR8749029	MeJA induced 9h	3.615
SRR8749030	Uninduced	6.623
SRR8749031	Uninduced	2.921
SRR8749032	Uninduced	3.149

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.906
SRR8400027	Control - Root	15.293