Gene detail

Gene detail information of Glyur000587s00026614

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G24930.1	3.00E-85	CONSTANS-like 4
NR	XP_004498823.1	2.55E-173	PREDICTED: zinc finger protein CONSTANS-LIKE 4-like [Cicer arietinum]
Swissprot	tr\|Q940T9\|COL4_ARATH	7.00E-104	Zinc finger protein CONSTANS-LIKE 4
trEMBL	tr\|Q52ZI7\|Q52ZI7_PEA	1.00E-173	CONSTANS-LIKE b {ECO:0000313\|EMBL:AAX47173.1}

Sequence

Transcript Sequence

>Glyur000587s00026614.1
CCACAGCGTCCTTGAATCCCCGTCCCCAAATTTTGCAGCGAGTATGTTTTTTTGGCTAAGGCTCTGCCACGTGTCATCCCTCAATTGGTCACTCCCCGGATCTCCCCTACCCCAACAGACACACCCTTAACCACACACCCCTCCCTCCACCCAACCTCACACACACCACACATTATCAACCTTCCTTCAACAACAACAACAACCACCTTCAACAAAAAAACAACAACAACCACACACACTCAAACCCAAGTCTCTCACCTTTCAAACACTCAACAAAACAAAACAATGGCTTCCAAGCTGTGCGATTCCTGCAAGTCAGCAACGGCCACCCTGTTCTGCCGTCCTGACTCAGCCTTCCTCTGCCTCCCCTGCGACGCCAAGATCCACGCCGCCAACATGCTCGCCTCACGCCACCCACGTGTCCCTCTCTGCGAGGTCTGTGAGCAAGCACCCGCTCACGTGACCTGCAAGGCCGACGCCGCCGCCCTCTGCCCCTCCTGCGACCACGACATCCACTCCGCCAACCCCCTAGCCCGCCGCCACGAACGCGTCCCCATCACCCCCTTCTACCACACCAACCACCAAGCCTTCTTCTCCGAACCCGAACCTAATGCTGATGTCACCACCGAAGAGGCTGAAGCCGCTTCCTGGCTCCTTCCTACTCCCTCCAACCCCAAAGGCCCCGATCTCAACTCCTCTCACTACTCCTTCCCCGAGATCGACCTCGACTTCGCCAAAACAGACTCGCCGGAACACAACAGTGCTGGCACCGCCGACGGAGTCGTGCCTGTGCAGTCTCAGAGCAAGACCGCCACTGAACACTACTCCGATAGCAACAACGATTTCCCTACCTCTAAGGCTTTTGCTTACAGCAACTACAATCACTGCGTATCGTCGCCGTCGATGGAGGTTGGGGTTGTGCCGGACGGGAATGCTATGTCGGAGATGTCGTACTGCTGCTACGGCAAGCCGGCGACNGAGGCTGTGCAGATCTCGGCGGCGGAAAGGGAAGCTAGGGTTTTGAGGTACAGGGAGAAGAGGAAGAATCGAAGGTTCGAGAAGACCATTCGCTACGCTTCGAGGAAAGCTTATGCGGAAACCAGGCCCAGGATTAAAGGAAGGTTNGCTAAACGCACCGATGTGAATCTANTCGCCGAGGACGACCCTTTTTCCGGATACGGCGTCGTTCCCACTTGTTGAATAATGCTTTCGGTGTTTAATAACTTAAAGCCTATAGTATAGGGTTATTGAATCATCATTAACCCCACCCCATGAATTAATGATATGTATGATGGTATGTATATGCTTAATTTTCTCGGCAGCTTTAATTCCTAAGGCTTTTTAGTTTTTTCCCCATCTTCTGTATATATTTTTTGTTCGAATCGATGCAGAAGCTGATCTGTAGTCATTGTATGTATCTTGACGTTTGTAGTAGTTGTNGTAGTAATAATCAATGAATTTTGTTGCACACTTTCAGCTACACTCTTGTTTCTTTTGGGTTTGGATCTCATAATTTTCTAGGTCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00587	27235	28855	-

Gene family

Gene family	subfamily
Transcription Factors Family	DBB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005622 intracellular

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000587s00026614.1	PF00643.19	zf-B_box	4	48	7.30E-06
Glyur000587s00026614.1	PF00643.19	zf-B_box	46	91	1.10E-06
Glyur000587s00026614.1	PF06203.9	CCT	241	284	9.30E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.550
SRR1783600	control	0.574
SRR1783602	moderate drought stress	2.075
SRR1811619	moderate drought stress	2.038

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.159
DRR006520	Root Summer glycyrrhizin high producing strain	9.354
DRR006521	Root Winter glycyrrhizin high producing strain	0.291
DRR006522	Root Winter glycyrrhizin high producing strain	0.284
DRR006523	Root Summer glycyrrhizin low producing strain	4.702
DRR006524	Root Summer glycyrrhizin low producing strain	4.502
DRR006525	Leaf Summer glycyrrhizin high producing strain	123.422
DRR006526	Leaf Summer glycyrrhizin high producing strain	123.358

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.481
SRR2868004	Drought Stress (root)	51.375
SRR2967015	Control (root)	26.394

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	221.658
SRR9715740	Leaf	271.707
SRR9715741	Leaf	240.140
SRR9715739	Root	0.452
SRR9715742	Root	6.645
SRR9715743	Root	3.364

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.548
SRR8749028	MeJA induced 9h	9.653
SRR8749029	MeJA induced 9h	13.209
SRR8749030	Uninduced	1.251
SRR8749031	Uninduced	0.483
SRR8749032	Uninduced	1.023

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.835
SRR8400027	Control - Root	6.400