Gene detail information of Glyur000586s00021842.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G51550.1 | 1.00E-133 | Kelch repeat-containing F-box family protein |
| NR | XP_004507024.1 | 0 | PREDICTED: F-box/kelch-repeat protein At1g51550-like [Cicer arietinum] |
| COG | YP_006924736.1 | 4.00E-10 | PKD domain containing protein [Methanolobus psychrophilus R15] |
| Swissprot | tr|Q9C8K7|FBK21_ARATH | 0 | F-box/kelch-repeat protein At1g51550 |
| trEMBL | tr|A0A072UFY6|A0A072UFY6_MEDTR | 0 | F-box/kelch-repeat plant protein {ECO:0000313|EMBL:KEH28597.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00586 | 66031 | 69632 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000586s00021842.1 | PF13415.1 | Kelch_3 | 178 | 235 | 6.40E-08 |
| Glyur000586s00021842.1 | PF13415.1 | Kelch_3 | 238 | 290 | 1.10E-08 |
| Glyur000586s00021842.1 | PF13418.1 | Kelch_4 | 341 | 377 | 0.00027 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 20.845 |
| SRR1783600 | control | 20.963 |
| SRR1783602 | moderate drought stress | 40.235 |
| SRR1811619 | moderate drought stress | 40.043 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 47.624 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 47.274 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 27.348 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 26.454 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 47.405 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 48.077 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.542 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.523 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.060 |
| SRR2868004 | Drought Stress (root) | 25.154 |
| SRR2967015 | Control (root) | 23.310 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.348 |
| SRR9715740 | Leaf | 19.547 |
| SRR9715741 | Leaf | 16.246 |
| SRR9715739 | Root | 23.795 |
| SRR9715742 | Root | 20.502 |
| SRR9715743 | Root | 22.485 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.587 |
| SRR8749028 | MeJA induced 9h | 10.175 |
| SRR8749029 | MeJA induced 9h | 5.986 |
| SRR8749030 | Uninduced | 6.322 |
| SRR8749031 | Uninduced | 3.444 |
| SRR8749032 | Uninduced | 5.142 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 26.131 |
| SRR8400027 | Control - Root | 25.028 |