Gene detail information of Glyur000586s00021839 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G16060.1 | 3.00E-36 | Cytochrome c oxidase biogenesis protein Cmc1-like |
| NR | AFK39994.1 | 4.82E-53 | unknown [Lotus japonicus] |
| trEMBL | tr|I3SIA2|I3SIA2_LOTJA | 2.00E-53 | Uncharacterized protein {ECO:0000313|EMBL:AFK39994.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00586 | 39914 | 43582 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000586s00021839.1 | PF08583.5 | Cmc1 | 20 | 85 | 3.50E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.105 |
| SRR1783600 | control | 7.089 |
| SRR1783602 | moderate drought stress | 7.562 |
| SRR1811619 | moderate drought stress | 7.453 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.517 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.909 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.134 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.031 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.940 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.447 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.082 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.503 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.223 |
| SRR2868004 | Drought Stress (root) | 14.787 |
| SRR2967015 | Control (root) | 12.154 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.730 |
| SRR9715740 | Leaf | 16.250 |
| SRR9715741 | Leaf | 13.027 |
| SRR9715739 | Root | 2.234 |
| SRR9715742 | Root | 6.016 |
| SRR9715743 | Root | 4.859 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.628 |
| SRR8749028 | MeJA induced 9h | 4.741 |
| SRR8749029 | MeJA induced 9h | 6.262 |
| SRR8749030 | Uninduced | 5.478 |
| SRR8749031 | Uninduced | 2.222 |
| SRR8749032 | Uninduced | 3.807 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.733 |
| SRR8400027 | Control - Root | 18.745 |