Gene detail

Gene detail information of Glyur000586s00021835

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G77940.1	1.00E-32	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
NR	XP_007151638.1	5.20E-45	hypothetical protein PHAVU_004G063700g [Phaseolus vulgaris]
COG	YP_004291579.1	3.00E-16	50S ribosomal protein L30e [Methanobacterium sp. AL-21]
Swissprot	tr\|O49884\|RL30_LUPLU	9.00E-46	60S ribosomal protein L30
trEMBL	tr\|V7C0E1\|V7C0E1_PHAVU	2.00E-45	Uncharacterized protein {ECO:0000313\|EMBL:ESW23632.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00586	18611	20145	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000586s00021835.1	PF01248.21	Ribosomal_L7Ae	7	68	9.70E-16

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	20.340
SRR1783600	control	21.831
SRR1783602	moderate drought stress	11.188
SRR1811619	moderate drought stress	13.066

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	52.266
DRR006520	Root Summer glycyrrhizin high producing strain	58.137
DRR006521	Root Winter glycyrrhizin high producing strain	31.141
DRR006522	Root Winter glycyrrhizin high producing strain	30.046
DRR006523	Root Summer glycyrrhizin low producing strain	42.986
DRR006524	Root Summer glycyrrhizin low producing strain	40.333
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.482
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.983

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	118.997
SRR2868004	Drought Stress (root)	80.920
SRR2967015	Control (root)	64.011

SRA Experiment	Description	TPM
SRR9715738	Leaf	40.187
SRR9715740	Leaf	38.617
SRR9715741	Leaf	41.167
SRR9715739	Root	27.788
SRR9715742	Root	34.366
SRR9715743	Root	34.798

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	85.953
SRR8749028	MeJA induced 9h	37.122
SRR8749029	MeJA induced 9h	54.802
SRR8749030	Uninduced	18.870
SRR8749031	Uninduced	8.224
SRR8749032	Uninduced	16.941

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	78.600
SRR8400027	Control - Root	73.239