Gene detail

Gene detail information of Glyur000585s00027748.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G18080.1	2.00E-151	B-S glucosidase 44
NR	XP_002281407.1	0	PREDICTED: beta-glucosidase 44 [Vitis vinifera]
COG	YP_004449345.1	2.00E-114	beta-galactosidase [Haliscomenobacter hydrossis DSM 1100]
Swissprot	tr\|Q5QMT0\|BGL01_ORYSJ	0	Beta-glucosidase 1 (Precursor)
trEMBL	tr\|D7SJ82\|D7SJ82_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI15543.3}

Sequence

Transcript Sequence

>Glyur000585s00027748.1
GAGNGAACAACGTTACTAATTACTATTACTAATATCTCCACAGTGTTATTGTTCAGTTCAATTCACTCACTGTTTGAGTGTGTACTGTGAGAGCGTGAAAATGGCGGTGTTGGATCCACACCCACACCAATGGCTCTGCTTCACTTTCTTCTTCTTCTTCTTCTTATTCTCTTTGGTGGTTGCTGAGTCTGTGGTGCCTGAAACGGTGCGTTTTGACACCGGTGGGTTGAGCAGGGAAGCGTTCCCGAAAGGGTTTTTGTTCGGAACGGCGTCGTCGGCGTTTCAAGTAGAGGGTATGGCCCACCAGGCTGGCCGTGGGCCCAGTATTTGGGACGTTTACATCCAAAAAGCCGGGATTGTCGCAAATAATGGCACGGCAGACGTTACTGTTGATGAGTACCATCGCTACAAAGAAGATGTAGATATCATGGCAAAGCTGAATTTTGATGCCTACCGATTCTCAATCTCGTGGTCCAGAATTTTTCCAAATGGAACTGGCAAAGTGAATTGGGAAGGTGTGGCATACTACAATAGATTGATCAATTACTTACTAGAAAAAGGCATTACTCCTTATGCAAATCTCTACCATTATGACCTTCCTTTAGCTCTTGAGTTGAGATACAATGGATTATTGAGCCATAGAGTTGTGAAAGATTTTGCGGATTATGCAGATTTCTGTTTCAAGACTTTTGGAGACAGAGTGAAGAACTGGATGACATTTAATGAACCAAGGGTAGTTGCTGCTCTTGGCTATGACAATGGTTTCTTTGCCCCAGGAAGGTGCTCAAAAGAGTATGGGAATTGTTCAGCTGGAAATTCAGGCACTGAGCCTTACATTGTAGCCCACAATTTGATACTGTCACATGCTGCTGCTGCTCAAAGATACCGAGAGAAATACCAAGAAAAGCAAAAGGGAAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAGCCTCTTACAAGATCAAAGGCTGACAACTATGCTGCTCAAAGAGCCAGAGACTTCCATGTTGGATGGTTCATTCATCCCCTTGTTTATGGTGAGTATCCTAGAACCATGCAGAATATTGTTGGGAACAGACTCCCCAAGTTCACCAAGAAGGAAGTGGAAATCAGTAAGTTGGAAACCACATTGATGTACATCAAGGAGCGTTATGGAAACCCAACTGTGATCTTATCTGAGAATGGCATGGATGATCCGGGTAATGTAACACTTCCCAAGGGTCTACATGACACCACAAGAATAAACTATTACAAAGGCTATTTGACTCAACTAAAGAAGGCTGTTGATGATGGGGCTAATGTGGTTGGATACTTTGCATGGTCATTGCTTGACAACTTTGAATGGAGGTTGGGGTACACATCAAGGTTTGGCATTGTCTATGTTGATTTCAAAACCCTCAAGAGATACCCCAAGATGTCAGCATATTGGTTCAAGCAGATGCTTACCAAGAAGCACTAAACTGCTGAGCTGAAACATCTGTTTTCTTTCTAAGCTTCTAGATGTTGCAATGAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00585	117278	121647	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05350	bglB	EC:3.2.1.21	Starch and sucrose metabolism	map00500
			Cyanoamino acid metabolism	map00460
			Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000585s00027748.1	PF00232.13	Glyco_hydro_1	45	338	8.10E-104
Glyur000585s00027748.1	PF00232.13	Glyco_hydro_1	341	452	7.70E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.835
SRR1783600	control	7.821
SRR1783602	moderate drought stress	4.970
SRR1811619	moderate drought stress	4.940

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.431
DRR006520	Root Summer glycyrrhizin high producing strain	3.608
DRR006521	Root Winter glycyrrhizin high producing strain	0.411
DRR006522	Root Winter glycyrrhizin high producing strain	0.359
DRR006523	Root Summer glycyrrhizin low producing strain	2.087
DRR006524	Root Summer glycyrrhizin low producing strain	1.918
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.549
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.293

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.458
SRR2868004	Drought Stress (root)	13.142
SRR2967015	Control (root)	16.407

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.713
SRR9715740	Leaf	11.281
SRR9715741	Leaf	9.717
SRR9715739	Root	3.968
SRR9715742	Root	4.951
SRR9715743	Root	4.908

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	35.984
SRR8749028	MeJA induced 9h	21.432
SRR8749029	MeJA induced 9h	23.626
SRR8749030	Uninduced	0.819
SRR8749031	Uninduced	1.031
SRR8749032	Uninduced	2.362

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.655
SRR8400027	Control - Root	28.745