Gene detail information of Glyur000585s00027741 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G03260.1 | 4.00E-21 | SNARE associated Golgi protein family |
| NR | XP_008368861.1 | 1.06E-28 | PREDICTED: transmembrane protein 41 homolog [Malus domestica] |
| trEMBL | tr|W9QKK5|W9QKK5_9ROSA | 1.00E-27 | Uncharacterized protein {ECO:0000313|EMBL:EXB39349.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00585 | 31587 | 34222 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.403 |
| SRR1783600 | control | 0.393 |
| SRR1783602 | moderate drought stress | 2.083 |
| SRR1811619 | moderate drought stress | 2.101 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.887 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.196 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.323 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.156 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.652 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.696 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.076 |
| SRR2868004 | Drought Stress (root) | 5.580 |
| SRR2967015 | Control (root) | 13.404 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.282 |
| SRR9715740 | Leaf | 0.481 |
| SRR9715741 | Leaf | 0.221 |
| SRR9715739 | Root | 0.063 |
| SRR9715742 | Root | 0.307 |
| SRR9715743 | Root | 0.425 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.814 |
| SRR8749028 | MeJA induced 9h | 0.605 |
| SRR8749029 | MeJA induced 9h | 0.684 |
| SRR8749030 | Uninduced | 0.336 |
| SRR8749031 | Uninduced | 0.231 |
| SRR8749032 | Uninduced | 1.924 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.157 |
| SRR8400027 | Control - Root | 3.394 |