Gene detail

Gene detail information of Glyur000585s00027740

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G73640.1	3.00E-84	RAB GTPase homolog A6A
NR	XP_003528970.1	5.12E-138	PREDICTED: ras-related protein RABA6b-like [Glycine max]
COG	YP_008431664.1	2.00E-21	hypothetical protein N186_01315 [Thermofilum sp. 1910b]
Swissprot	tr\|Q9C9U7\|RAA6A_ARATH	2.00E-105	Ras-related protein RABA6a
trEMBL	tr\|I1KJ43\|I1KJ43_SOYBN	2.00E-138	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G11420.1}

Sequence

Transcript Sequence

>Glyur000585s00027740.1
GTGTATACACACACACCATGCACCCTTTTGTTACTTTCTCCCTATCCTACACTGTATAGTTCATAACACAAGTTTTAAGCGTTTTGTTTCATTTGATCAGATTCCTCCTCTTTGGGTATAAGAAGAGAAGAGGGGGGAGGAACAAAGGGTTGAGAGATAAATAAAAGGGTCTCTCATATTAATCATTCATATATATGGCTGATGCATTTGATGAGCAGTGTGATTACCTGTTCAAGGCAGTTCTGATTGGAGACTCAGGAGTTGGGAAATCAAATCTGATCTCAAGGTTTGCAAAAGATGAGTTCCATCTGGATTCCAAGCCCACCATAGGTGTGGAGTTTGCTTACAGGAACATCAAGGTCAGAGACAAGCTCATCAAAGCACAAATATGGGACACTGCCGGCCAAGAGAGGTTTAGAGCTATAACAAGCTCATACTACAGAGGAGCCTTGGGGGCAATGCTAGTGTATGACATAACCAGGAGACCAACTTTTGATAATGTAAGGAAATGGTTACATGAGCTGAGAGAGTTTGGGGGTGAAGACATGGTGATTATTCTAGTAGCAAACAAATCTGATTTGGGCCAATCAAGGGAAGTGGAGAGAGAAGAAGGAAAAGGGTTTGCAGAAACAGAAGGGTTATGTTTTATGGAAACCTCTGCTTTGCAAAATCTGAATGTTGAGGAAGCTTTCTTACAAATGATCACCAAGATCCATGATATCATAAGCCAGAAAAGTTTGGAAGCCAAAAAGATGAATGGGTCAATGTTGAGTCTTCCAAGTGGGAAAGAGATCCATATAGCTGATGAAGTGACTGCTACTAAACAACCCAATTGCTGTTCAAGATGAGAACTACTTGCCCAATGAATTTTTGCTATTTTGCAAGTAAAGTATCATTAATTAACAACTCAGTTATTGACTCTTATACTATTTTCCAAGGTTTTAAATTGCAGTTTCGGTTTGAGAGACTCCAAATTGTGGTCATTAATTAAAAACTTTGATATTACGGGAAATTACGGACAAATACAGCCAATGCAGCCGTAATTGTGGTCGCGATACGGTTTTGGAGACTCCAAAAACCTTGATGTTGTGACTGCAATCGCGGTTGCGGACCGCAGTTTAAAACCCTGCTATTTTCCCACTTCTCTTTGTATTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00585	26918	30510	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0006913 nucleocytoplasmic transport

GO:0007165 signal transduction

GO:0007264 small GTPase mediated signal transduction

GO:0015031 protein transport

cellular_component

GO:0005622 intracellular

GO:0016020 membrane

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000585s00027740.1	PF00071.17	Ras	14	174	4.60E-59

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.888
SRR1783600	control	7.841
SRR1783602	moderate drought stress	12.476
SRR1811619	moderate drought stress	12.367

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.693
DRR006520	Root Summer glycyrrhizin high producing strain	9.484
DRR006521	Root Winter glycyrrhizin high producing strain	8.231
DRR006522	Root Winter glycyrrhizin high producing strain	8.049
DRR006523	Root Summer glycyrrhizin low producing strain	24.300
DRR006524	Root Summer glycyrrhizin low producing strain	25.197
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.930
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.061

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.707
SRR2868004	Drought Stress (root)	27.537
SRR2967015	Control (root)	52.536

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.289
SRR9715740	Leaf	3.796
SRR9715741	Leaf	3.249
SRR9715739	Root	4.353
SRR9715742	Root	2.766
SRR9715743	Root	2.564

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.511
SRR8749028	MeJA induced 9h	7.399
SRR8749029	MeJA induced 9h	3.549
SRR8749030	Uninduced	2.902
SRR8749031	Uninduced	5.453
SRR8749032	Uninduced	3.308

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.907
SRR8400027	Control - Root	14.899