Gene detail information of Glyur000584s00039448 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G01670.1 | 2.00E-48 | nudix hydrolase homolog 17 |
| NR | XP_007163378.1 | 8.72E-97 | hypothetical protein PHAVU_001G229700g [Phaseolus vulgaris] |
| COG | YP_002360563.1 | 8.00E-09 | NUDIX hydrolase [Methylocella silvestris BL2] |
| Swissprot | tr|Q9ZU95|NUD17_ARATH | 5.00E-60 | Nudix hydrolase 17, mitochondrial (Precursor) |
| trEMBL | tr|V7CYX7|V7CYX7_PHAVU | 3.00E-97 | Uncharacterized protein {ECO:0000313|EMBL:ESW35372.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00584 | 103427 | 105505 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000584s00039448.1 | PF00293.23 | NUDIX | 31 | 132 | 1.30E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.184 |
| SRR1783600 | control | 1.124 |
| SRR1783602 | moderate drought stress | 1.340 |
| SRR1811619 | moderate drought stress | 1.515 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.628 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.032 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.496 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.989 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.643 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.718 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 51.825 |
| SRR2868004 | Drought Stress (root) | 75.063 |
| SRR2967015 | Control (root) | 49.376 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 40.990 |
| SRR9715740 | Leaf | 35.073 |
| SRR9715741 | Leaf | 36.208 |
| SRR9715739 | Root | 2.031 |
| SRR9715742 | Root | 2.759 |
| SRR9715743 | Root | 3.368 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.032 |
| SRR8749028 | MeJA induced 9h | 50.351 |
| SRR8749029 | MeJA induced 9h | 14.136 |
| SRR8749030 | Uninduced | 19.035 |
| SRR8749031 | Uninduced | 82.898 |
| SRR8749032 | Uninduced | 30.606 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.019 |
| SRR8400027 | Control - Root | 10.165 |