Gene detail information of Glyur000583s00027219 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G42140.1 | 3.00E-06 | zinc ion binding;nucleic acid binding |
| NR | KHG23517.1 | 2.98E-11 | Kinesin-4 -like protein [Gossypium arboreum] |
| trEMBL | tr|M5VIG0|M5VIG0_PRUPE | 4.00E-08 | Uncharacterized protein {ECO:0000313|EMBL:EMJ00536.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00583 | 120295 | 121777 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000583s00027219.1 | PF14111.1 | DUF4283 | 3 | 73 | 1.00E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.233 |
| SRR1783600 | control | 2.152 |
| SRR1783602 | moderate drought stress | 2.905 |
| SRR1811619 | moderate drought stress | 2.845 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.633 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.547 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.107 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.105 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.739 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.946 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.304 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.367 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.113 |
| SRR2868004 | Drought Stress (root) | 4.117 |
| SRR2967015 | Control (root) | 3.565 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.362 |
| SRR9715740 | Leaf | 0.321 |
| SRR9715741 | Leaf | 1.064 |
| SRR9715739 | Root | 0.363 |
| SRR9715742 | Root | 0.651 |
| SRR9715743 | Root | 0.563 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.337 |
| SRR8749028 | MeJA induced 9h | 1.127 |
| SRR8749029 | MeJA induced 9h | 0.295 |
| SRR8749030 | Uninduced | 0.447 |
| SRR8749031 | Uninduced | 1.268 |
| SRR8749032 | Uninduced | 0.210 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.485 |
| SRR8400027 | Control - Root | 1.758 |