Gene detail information of Glyur000583s00027216 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G72020.1 | 2.00E-26 | |
| NR | XP_002325548.1 | 1.81E-49 | hypothetical protein POPTR_0019s11110g [Populus trichocarpa] |
| trEMBL | tr|A9P8B4|A9P8B4_POPTR | 7.00E-50 | Uncharacterized protein {ECO:0000313|EMBL:EEE99929.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00583 | 85840 | 87951 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 24.740 |
| SRR1783600 | control | 24.185 |
| SRR1783602 | moderate drought stress | 12.621 |
| SRR1811619 | moderate drought stress | 12.461 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 82.510 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 82.756 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 37.956 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 36.656 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 57.525 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 58.156 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 45.531 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 45.342 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 160.999 |
| SRR2868004 | Drought Stress (root) | 119.266 |
| SRR2967015 | Control (root) | 93.978 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 120.785 |
| SRR9715740 | Leaf | 115.823 |
| SRR9715741 | Leaf | 119.102 |
| SRR9715739 | Root | 90.979 |
| SRR9715742 | Root | 65.013 |
| SRR9715743 | Root | 65.925 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 74.860 |
| SRR8749028 | MeJA induced 9h | 46.473 |
| SRR8749029 | MeJA induced 9h | 60.616 |
| SRR8749030 | Uninduced | 63.252 |
| SRR8749031 | Uninduced | 42.926 |
| SRR8749032 | Uninduced | 55.825 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 119.243 |
| SRR8400027 | Control - Root | 107.617 |