Gene detail information of Glyur000583s00027213 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G51110.1 | 1.00E-67 | Transcriptional coactivator/pterin dehydratase |
| NR | AFK45572.1 | 2.86E-104 | unknown [Lotus japonicus] |
| COG | YP_007202898.1 | 2.00E-22 | pterin-4a-carbinolamine dehydratase [Singulisphaera acidiphila DSM 18658] |
| trEMBL | tr|I3SZ80|I3SZ80_LOTJA | 1.00E-104 | Uncharacterized protein {ECO:0000313|EMBL:AFK45572.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00583 | 79657 | 82448 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000583s00027213.1 | PF01329.14 | Pterin_4a | 111 | 206 | 1.20E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 30.909 |
| SRR1783600 | control | 30.886 |
| SRR1783602 | moderate drought stress | 26.521 |
| SRR1811619 | moderate drought stress | 26.310 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.718 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.228 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 21.752 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 22.460 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.801 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 23.113 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 339.344 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 333.428 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 24.158 |
| SRR2868004 | Drought Stress (root) | 24.175 |
| SRR2967015 | Control (root) | 17.143 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 336.791 |
| SRR9715740 | Leaf | 398.869 |
| SRR9715741 | Leaf | 267.886 |
| SRR9715739 | Root | 15.356 |
| SRR9715742 | Root | 11.698 |
| SRR9715743 | Root | 12.512 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.528 |
| SRR8749028 | MeJA induced 9h | 12.194 |
| SRR8749029 | MeJA induced 9h | 17.813 |
| SRR8749030 | Uninduced | 3.234 |
| SRR8749031 | Uninduced | 0.863 |
| SRR8749032 | Uninduced | 4.106 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 29.274 |
| SRR8400027 | Control - Root | 29.066 |