Gene detail

Gene detail information of Glyur000583s00027206

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G28550.2	5.00E-43	related to AP2.7
NR	XP_007145449.1	1.25E-128	hypothetical protein PHAVU_007G240200g [Phaseolus vulgaris]
Swissprot	tr\|Q9SK03\|RAP27_ARATH	2.00E-54	Ethylene-responsive transcription factor RAP2-7
trEMBL	tr\|V7BK84\|V7BK84_PHAVU	5.00E-129	Uncharacterized protein {ECO:0000313\|EMBL:ESW17443.1}

Sequence

Transcript Sequence

>Glyur000583s00027206.1
ATGTCTATGTTGGATCTCAATGTTGACAATATTACCCATGACCATGCTGATGGTAATCCCTCAACTTGTGTTCAAAAGGGGTTGCAACTGAAAAGCTTTCTACCTGACATATCAGATTCCAAGACCTCCAATTCTTCTGTTTGGAACCCTCTTGCAGAGGAAGATTCCTCAAACAGCTCTTCTGATCCCTTCCTTTTTAGCCTATTGAAGAAAGAAAGGGATGATGGCTCAGAATTTCATCATACCACAGCACAAGAGGCAGAGATAGTCACAGTCACAACAAGGACCCTTTTCCCTGTGATTTCTGATAGAGGAGGTAGAATGGCGTCTGATTTCAACAAGTTGGGGTTGTGGGGGAAGAAGAGTACTCAATGGCAGAACAACCTGAACTTGTCTTTTCCTGAGCCTGGTGAACAAAAGGGACTTAGAACAACCACCTTGCAGCAGAAGCAACCTCAAGCTAGGAAACGTAGGAGAGGACCAAAGTCTCGCAGCTCACAGTACCGGGGTGTTACCTTCTACCGCAGGACTGGTAGATGGGAGTCACATATATGGGATTGTGGGAAGCAGGTCTATTTGGGTGGATTTGACACTGCTCATGCTGCTGCAAGGGCCTATGATAGGGCTGCTATTAAGTTTCGAGGAGATGATGCTGACATAAACTTCAGTTTGAGTGATTATGAGGAGGATTTGAAGCAGATGAGAGGTTTGAGTAAGGAAGAATTTGTCCTCATACTTCGTAGACAAACCAATGGAATATCAAGGAGAAGTTCAACATACAGAGGTGCATTAGCTCTTCAAAGATATGGTCGAGGAAATCCACCAATGGGACCATTTGTTGGCAAAACATTTTATCANAAGCCAGCCATCAAGCGTGATGATAAAGTAGAAGCCCGTTTTAAGCCCAACAGAGCAGGCACTTTCCATAATCTTGATCTGAGCTTAGGTATCTCGCCATCTCCTAAACAATTGAATAGCAGTGATTCTGGAGAATGGAATAGGACAAACACTGGCAAGCAGGATAGCACANGACAAGAGAAGGCTTTGGTAAACAGAGAAAAAAAGATGTTCCCCTGCAAAGATCTTCTTCCAACTTGGCCTGGCAACTTTGCAACAAATGCAGCACTTCCATAGGGCCATTGCAATCGAATGCAGCATCATCAGGATTCGTCTCTTCTAGTAGCTGTTTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00583	43444	47391	-

Gene family

Gene family	subfamily
Transcription Factors Family	ERF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000583s00027206.1	PF00847.15	AP2	166	215	9.80E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.153
SRR1783600	control	0.163
SRR1783602	moderate drought stress	0.319
SRR1811619	moderate drought stress	0.368

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.090
DRR006520	Root Summer glycyrrhizin high producing strain	0.088
DRR006521	Root Winter glycyrrhizin high producing strain	1.038
DRR006522	Root Winter glycyrrhizin high producing strain	0.972
DRR006523	Root Summer glycyrrhizin low producing strain	0.962
DRR006524	Root Summer glycyrrhizin low producing strain	1.100
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.240
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.223

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.129
SRR2868004	Drought Stress (root)	4.541
SRR2967015	Control (root)	5.667

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.151
SRR9715740	Leaf	4.234
SRR9715741	Leaf	2.394
SRR9715739	Root	0.157
SRR9715742	Root	0.300
SRR9715743	Root	0.295

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.077
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.085
SRR8749030	Uninduced	0.187
SRR8749031	Uninduced	0.024
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.272
SRR8400027	Control - Root	3.364