Gene detail information of Glyur000581s00027351 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G09670.1 | 2.00E-114 | Oxidoreductase family protein |
| NR | XP_004489742.1 | 0 | PREDICTED: uncharacterized oxidoreductase At4g09670-like [Cicer arietinum] |
| COG | NP_522474.1 | 7.00E-50 | hypothetical protein RS01685 [Ralstonia solanacearum GMI1000] |
| Swissprot | tr|Q9SZ83|Y4967_ARATH | 4.00E-154 | Uncharacterized oxidoreductase At4g09670 |
| trEMBL | tr|B7FJM8|B7FJM8_MEDTR | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:ACJ84957.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00581 | 111562 | 114792 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000581s00027351.1 | PF01408.17 | GFO_IDH_MocA | 10 | 130 | 7.10E-23 |
| Glyur000581s00027351.1 | PF02894.12 | GFO_IDH_MocA_C | 153 | 255 | 3.10E-05 |
| Glyur000581s00027351.2 | PF01408.17 | GFO_IDH_MocA | 10 | 130 | 4.60E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 35.083 |
| SRR1783600 | control | 33.873 |
| SRR1783602 | moderate drought stress | 34.002 |
| SRR1811619 | moderate drought stress | 32.749 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 46.333 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 45.944 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.683 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.117 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.357 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.350 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.876 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.925 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.998 |
| SRR2868004 | Drought Stress (root) | 37.808 |
| SRR2967015 | Control (root) | 21.976 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.810 |
| SRR9715740 | Leaf | 6.027 |
| SRR9715741 | Leaf | 3.581 |
| SRR9715739 | Root | 28.672 |
| SRR9715742 | Root | 52.321 |
| SRR9715743 | Root | 45.736 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.121 |
| SRR8749028 | MeJA induced 9h | 2.097 |
| SRR8749029 | MeJA induced 9h | 1.625 |
| SRR8749030 | Uninduced | 0.052 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 30.539 |
| SRR8400027 | Control - Root | 43.165 |