Gene detail information of Glyur000581s00027335 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G53420.2 | 3.00E-39 | plasma membrane intrinsic protein 2A |
| NR | XP_003625627.1 | 8.50E-62 | Aquaporin PIP2-1 [Medicago truncatula] |
| Swissprot | tr|P43286|PIP21_ARATH | 2.00E-47 | Aquaporin PIP2-1, N-terminally processed |
| trEMBL | tr|Q2HV44|Q2HV44_MEDTR | 3.00E-62 | Major intrinsic protein (MIP) family transporter {ECO:0000313|EMBL:AES81845.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00581 | 621 | 941 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000581s00027335.1 | PF00230.15 | MIP | 32 | 103 | 2.70E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.563 |
| SRR1783600 | control | 14.757 |
| SRR1783602 | moderate drought stress | 24.290 |
| SRR1811619 | moderate drought stress | 19.952 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.379 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.501 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.348 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.503 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.263 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.411 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 522.935 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 453.895 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.732 |
| SRR2868004 | Drought Stress (root) | 2.279 |
| SRR2967015 | Control (root) | 2.976 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 90.463 |
| SRR9715740 | Leaf | 51.302 |
| SRR9715741 | Leaf | 56.946 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.691 |
| SRR9715743 | Root | 0.191 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.007 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.000 |
| SRR8400027 | Control - Root | 0.212 |