Gene detail

Gene detail information of Glyur000580s00024210.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G36860.1	0	LIM domain-containing protein
NR	XP_003517260.1	0	PREDICTED: protein DA1-related 1-like isoformX1 [Glycine max]
COG	YP_007039105.1	8.00E-08	hypothetical protein BN6_49630 [Saccharothrix espanaensis DSM 44229]
Swissprot	tr\|Q8W4F0\|DAR1_ARATH	0	Protein DA1-related 1
trEMBL	tr\|I1J903\|I1J903_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G38640.1}

Sequence

Transcript Sequence

>Glyur000580s00024210.2
GCCCAACCTACTCTTTGTCGTGCTTAGCAGCATTAATGGGATTGCTGATTTTGGATTCATCAGATTCCATTTTCTCTGCAGATTCTTAATCTCTCCCCGGAAAAGGTTTGCCAACCTGAAGGGGAATAATTTTGCATGATATGGGTTGGTTTACCAAGTTGCTCAAGGGCTCCAACCATAAAATTTCACGAGGACAATACCATGGCAAATATGGCGATGACAGAATTTGGGATAATCATCATAGTTCAGTGGATGATTTGACGGATATTGAGAAAGAAGAGATTGACTGTGCAATTGCACTCTCTCTGTCAGAGGAGGATCATAAAGGGAAAAAAGTTATTGAGGATGACTCTCAGTCTGAAGANGATGAACAACTTTGTAAAATTGATGAGGAGGAAGATGAACATGTCAGTAAAGTTCAACCAAAGGAAGAAGAAGATCTCGGTAAAGTCCGACTAGATGAAGATGAACTTCTAGCTAAAATTCAACAGGATGAAGATGAACATCTTGCCAAAGGTCAGCTTGAGGAAGATGAGCAACTTGCAAGGGCAATTCAAGAAAGTTTGAACATTGGTTCTCCTCCTCGACATGACAATGATTCTGTATTTNAATCTTTGCCCCACCTCATTCCACCTGGATACAGAATCTGTGCTGGATGCAACACTGAGATTGGCCACGGAAGATTTTTAAGTTGCATGGGAGCTGTCTGGCATCCACATTGCTTCCGCTGCCATGCTTGCCATCTGCCAATCACTGANTATGAGTTTTCCATGTCTAGCAACCGTCCTTACCACAAATCCTGCTATAGGGAGAAACATCACCCAAGATGTGATGTTTGCAAGAATTTTATCCCAGCTAATTCAGCTGGCCTCATTGAGTATAGAGCTCATCCTTTCTGGCTACAAAAATACTGCCCATCACATGAGCTTGATGGCACTCCTCGTTGTTGTAGCTGCGAAAGAATGGAGCCAAGGGATACAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTCTTGAGTGTCTAGACTCAGCAATTATGGATACTCATGAATGCCAACCTCTCTACCTTGAAATACAAGAATTTTATGAAGGTTTAAATATGAAAGTGGAGCAGCAAATTCCTATGCTTTTGGTCGAGAGACAAGCACTAAATGAGGCCATGGAGGGAGAAAAGAACGGTCATCACCATTTACCTGAAACCAGAGGACTCTGCTTGTCGGAAGAACAAACTGTCACCACNATTTTAAGGAGACCAAAGATAGGGGCAGGATACCAAGNCATGGACATGATAACTGAGCCTTATAGACTGACCCGTCGTTGTGAAGTGACAGCCGTTCTTGTTTTGTATGGCCTTCCTAGGTTGTTGACAGGATCAATCCTAGCTCATGAGATGATGCATGCATGGCTCAGGCTTAAAGGTTATCCCAGCCTGAGTCCTGAAGTTGAAGAAGGAATCTGCCAAGTCTTGGCTCATATGTGGTTAGAGTCAGAGCTCTATTCTGGATCTGGGAATAATGGTGCATCCTCTTCGTCCTCATCCTCATCATCACCTTCCTCCTCTTCCACGTCATCAAAGAAGGGTAAACGGTCTGATTTTGAGAAGAAACTTGGTGAGTATTTTAAACACCAGGTTGAGGCAGATACCTCGTCAGCTTATGGAGATGGGTTCAGATTGGGTAACCAGGCAGTGCTCAAGTATGGGCTCAAAAGAACCCTTGACCATATCCAAATGACAGGAAGTTTTCCATGTTGAAAATTTGAAAGATAGCATAATTTTTTTTCACCCATACATNGACCAATACTTCTTCAGCTTGGTCATATAAATTATAGGCAAATTATCGAGTATCCTTGAAGCACTTTTTTAAGGATTCTAAAATAGAAAGTATTGAATTAAAGGAAAAGTTTTTATGTTATGTTGTTTTTGAACACTACGCTTTCTACTTTTTGATTCCTTAGTCTGGTGCTTTTAGGGTACTCGATAACAAGATCTTAAATTATATAGATTTGAATATCATAAAGCTTAACACTAGAGACAAATTAAGGAATAAAAATGCACCTCTTGGCGTGTGGTCGCTATAATCTCATCTCAAATGTTGGCACCGAGTCTTGTATATGCATCACTGGATATAATAATTTCATCTCAGATGAGAAAAGCAGCTGAAGCAATGAAAGTTTAAAGTATATAATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00580	85063	90843	-

Gene family

Gene family	subfamily
Transcription Factors Family	LIM

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000580s00024210.2	PF00412.17	LIM	170	225	1.50E-09
Glyur000580s00024210.2	PF12315.3	DUF3633	319	534	7.50E-103

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.133
SRR1783600	control	18.261
SRR1783602	moderate drought stress	26.612
SRR1811619	moderate drought stress	26.425

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	32.105
DRR006520	Root Summer glycyrrhizin high producing strain	31.400
DRR006521	Root Winter glycyrrhizin high producing strain	19.083
DRR006522	Root Winter glycyrrhizin high producing strain	19.093
DRR006523	Root Summer glycyrrhizin low producing strain	31.618
DRR006524	Root Summer glycyrrhizin low producing strain	31.457
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.996
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.568

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.678
SRR2868004	Drought Stress (root)	30.789
SRR2967015	Control (root)	31.010

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.243
SRR9715740	Leaf	25.624
SRR9715741	Leaf	26.254
SRR9715739	Root	6.725
SRR9715742	Root	19.731
SRR9715743	Root	14.585

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.715
SRR8749028	MeJA induced 9h	21.605
SRR8749029	MeJA induced 9h	10.328
SRR8749030	Uninduced	17.504
SRR8749031	Uninduced	9.495
SRR8749032	Uninduced	11.851

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.165
SRR8400027	Control - Root	19.327