Gene detail information of Glyur000580s00024208 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G66631.1 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004512000.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g66631-like [Cicer arietinum] |
| Swissprot | tr|B3H4P1|PP450_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g66631 |
| trEMBL | tr|K7LNC7|K7LNC7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G06730.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00580 | 78208 | 80205 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000580s00024208.1 | PF13041.1 | PPR_2 | 179 | 223 | 1.60E-09 |
| Glyur000580s00024208.1 | PF01535.15 | PPR | 250 | 278 | 0.66 |
| Glyur000580s00024208.1 | PF01535.15 | PPR | 498 | 526 | 0.0028 |
| Glyur000580s00024208.1 | PF13041.1 | PPR_2 | 568 | 608 | 9.40E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.037 |
| SRR1783600 | control | 1.028 |
| SRR1783602 | moderate drought stress | 0.816 |
| SRR1811619 | moderate drought stress | 0.775 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.787 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.895 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.619 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.440 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.891 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.857 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.884 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.846 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.569 |
| SRR2868004 | Drought Stress (root) | 1.437 |
| SRR2967015 | Control (root) | 1.285 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.843 |
| SRR9715740 | Leaf | 1.157 |
| SRR9715741 | Leaf | 0.736 |
| SRR9715739 | Root | 1.351 |
| SRR9715742 | Root | 1.160 |
| SRR9715743 | Root | 1.080 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.831 |
| SRR8749028 | MeJA induced 9h | 1.855 |
| SRR8749029 | MeJA induced 9h | 1.078 |
| SRR8749030 | Uninduced | 0.669 |
| SRR8749031 | Uninduced | 0.038 |
| SRR8749032 | Uninduced | 0.201 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.121 |
| SRR8400027 | Control - Root | 1.844 |