Gene detail information of Glyur000580s00024204 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G36850.1 | 3.00E-134 | PQ-loop repeat family protein / transmembrane family protein |
| NR | XP_003611897.1 | 0 | Membrane protein, putative [Medicago truncatula] |
| trEMBL | tr|G7KAU2|G7KAU2_MEDTR | 0 | PQ-loop protein/transmembrane family protein {ECO:0000313|EMBL:AES94855.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00580 | 50401 | 55252 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000580s00024204.1 | PF04193.9 | PQ-loop | 32 | 88 | 3.80E-18 |
| Glyur000580s00024204.1 | PF04193.9 | PQ-loop | 271 | 329 | 1.20E-16 |
| Glyur000580s00024204.2 | PF04193.9 | PQ-loop | 32 | 88 | 3.70E-18 |
| Glyur000580s00024204.2 | PF04193.9 | PQ-loop | 271 | 322 | 5.00E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 134.557 |
| SRR1783600 | control | 135.273 |
| SRR1783602 | moderate drought stress | 148.903 |
| SRR1811619 | moderate drought stress | 147.606 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.739 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.755 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 166.945 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 162.932 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.634 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.693 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.314 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.230 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.074 |
| SRR2868004 | Drought Stress (root) | 8.576 |
| SRR2967015 | Control (root) | 10.808 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.394 |
| SRR9715740 | Leaf | 1.072 |
| SRR9715741 | Leaf | 0.207 |
| SRR9715739 | Root | 6.735 |
| SRR9715742 | Root | 9.403 |
| SRR9715743 | Root | 6.288 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.194 |
| SRR8749028 | MeJA induced 9h | 0.063 |
| SRR8749029 | MeJA induced 9h | 0.526 |
| SRR8749030 | Uninduced | 0.372 |
| SRR8749031 | Uninduced | 0.123 |
| SRR8749032 | Uninduced | 1.474 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.156 |
| SRR8400027 | Control - Root | 6.653 |