Gene detail

Gene detail information of Glyur000580s00024203

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G50760.1	3.00E-128	galacturonosyltransferase-like 2
NR	XP_003516580.1	0	PREDICTED: probable galacturonosyltransferase-like 1-like isoform X1 [Glycine max]
COG	YP_007062961.1	3.00E-21	LPS:glycosyltransferase [Synechococcus sp. PCC 6312]
Swissprot	tr\|Q9S7G2\|GATL2_ARATH	1.00E-174	Probable galacturonosyltransferase-like 2
trEMBL	tr\|I1J8Z3\|I1J8Z3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G38520.1}

Sequence

Transcript Sequence

>Glyur000580s00024203.1
ATGGGGGCATATTCCACGGCCAACTTCACCATTTGCCACGCCTTCCACCATTATTTCTGTNTCCTCCTTCTCCTCTCCACTACTCATGTTGTCACGTGCATCAGCACGAGCGGTGCGGCCACCACTACTCAACGCTTCAAACAGGCCCCAAAATTCTACAACTCCCCAAACTGCCCCACCCTGAAACCCACCGACACGTGCTCCGACGAAGCTGTCCACGTGGCAATGACGCTTGACATCACCTACCTCCGCGGCTCCATGGCCGCCATTCTCTCCGTCCTCCAACACTCCTCCTGCCCCGAAAACACCGTCTTCCACTTCGTCACCGCCGCCTCCAGAGCCTCCTCNTCCTCGTCCCTCAACATCACGCTCTCGAATTCGTTCCCGTATCTGAAATTCCAAATCTACCCCTTCGAGGACGACGACGCCGTTTCGGGGCTGATCTCCACCTCGATCCGCTCCGCACTGGATTGCCCCCTCAACTACGCACGCAACTACATGGCCAACCTCCTCCCAACCTGCGTACGGAAAGTCGTTTACCTCGATTCCGACCTCGTCCTCGTCGACGACATCGCCAAGCTCGCCGCAACTCCCCTCGGAGATGACGCCGTCCTCGCCGCGCCGGAGTACTGCAACGCAAACTTCAGCGCCTACTTCACCCCAACGTTCTGGTCCAACCCTTCCCTCTCCCTCACCTTCGCGGGACGCAGGCCATGCTACTTCAACACCGGCGTCATGGTCATCGACCTACAGCGGTGGCGCGCCGGTGACTACACAACCGTGATCCAGGAGTGGATGGAACTCCAGAAGAGAATGCGGATCTACGAGCTCGGGTCGTTGCCGCCGTTTTTGCTGGTCTTCGCCGGGAGGATAGTCCCGGTGGATCACCGGTGGAACCAGCACGGGCTCGGCGGTGACAACTTCCGTGGGCTTTGTAGGGATTTGCATCCGGGCCCGGTGAGCCTGCTGCATTGGAGTGGGAAGGGGAAGCCGTGGGCCAGGCTCGACGCTAACCGCCCTTGTCCGTTGGATGCGTTATGGGCTCCCTATGACCTTCTCGAGACACCTTTCGCTCTTGAGGCCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00580	42880	43965	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016757 transferase activity, transferring glycosyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000580s00024203.1	PF01501.15	Glyco_transf_8	73	335	2.80E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.075
SRR1783600	control	3.126
SRR1783602	moderate drought stress	3.095
SRR1811619	moderate drought stress	3.400

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.828
DRR006520	Root Summer glycyrrhizin high producing strain	10.211
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.100
DRR006523	Root Summer glycyrrhizin low producing strain	1.830
DRR006524	Root Summer glycyrrhizin low producing strain	1.832
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.615
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.639

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.753
SRR2868004	Drought Stress (root)	9.804
SRR2967015	Control (root)	7.278

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.477
SRR9715740	Leaf	8.199
SRR9715741	Leaf	3.833
SRR9715739	Root	8.754
SRR9715742	Root	11.253
SRR9715743	Root	12.545

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.813
SRR8749028	MeJA induced 9h	14.217
SRR8749029	MeJA induced 9h	20.410
SRR8749030	Uninduced	0.997
SRR8749031	Uninduced	0.938
SRR8749032	Uninduced	6.094

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.555
SRR8400027	Control - Root	3.924