Gene detail information of Glyur000580s00024201.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G23780.1 | 3.00E-60 | RING/U-box superfamily protein |
| NR | XP_006573604.1 | 4.25E-149 | PREDICTED: RING finger protein 5-like [Glycine max] |
| Swissprot | tr|Q6R567|RMA1_CAPAN | 3.00E-27 | E3 ubiquitin-protein ligase RMA1H1 |
| trEMBL | tr|I1J8Z2|I1J8Z2_SOYBN | 2.00E-149 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G38510.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00580 | 34485 | 35180 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10666 | RNF5 | EC:2.3.2.27 | Protein processing in endoplasmic reticulum | map04141 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000580s00024201.1 | PF13923.1 | zf-C3HC4_2 | 32 | 72 | 6.20E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 40.898 |
| SRR1783600 | control | 40.219 |
| SRR1783602 | moderate drought stress | 40.782 |
| SRR1811619 | moderate drought stress | 39.084 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 80.619 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 79.299 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 49.541 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 48.308 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 95.369 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 94.694 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 30.653 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 30.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 47.498 |
| SRR2868004 | Drought Stress (root) | 57.224 |
| SRR2967015 | Control (root) | 54.608 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 93.175 |
| SRR9715740 | Leaf | 101.665 |
| SRR9715741 | Leaf | 96.647 |
| SRR9715739 | Root | 200.064 |
| SRR9715742 | Root | 124.500 |
| SRR9715743 | Root | 137.055 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 48.920 |
| SRR8749028 | MeJA induced 9h | 43.338 |
| SRR8749029 | MeJA induced 9h | 65.997 |
| SRR8749030 | Uninduced | 20.985 |
| SRR8749031 | Uninduced | 15.447 |
| SRR8749032 | Uninduced | 67.348 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 51.048 |
| SRR8400027 | Control - Root | 76.041 |