Gene detail information of Glyur000580s00024200 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G36830.1 | 4.00E-96 | GNS1/SUR4 membrane protein family |
| NR | XP_003538839.1 | 5.65E-167 | PREDICTED: elongation of fatty acids protein A-like [Glycine max] |
| Swissprot | tr|Q9SYY4|ELO3L_ARATH | 1.00E-130 | Elongation of fatty acids protein 3-like |
| trEMBL | tr|I1LHM3|I1LHM3_SOYBN | 2.00E-167 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G06790.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00580 | 31725 | 32657 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000580s00024200.1 | PF01151.13 | ELO | 34 | 278 | 5.20E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.225 |
| SRR1783600 | control | 1.257 |
| SRR1783602 | moderate drought stress | 1.512 |
| SRR1811619 | moderate drought stress | 1.668 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.897 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.707 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.116 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.838 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.578 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.534 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.907 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.606 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.834 |
| SRR2868004 | Drought Stress (root) | 6.052 |
| SRR2967015 | Control (root) | 3.225 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 37.897 |
| SRR9715740 | Leaf | 51.488 |
| SRR9715741 | Leaf | 28.305 |
| SRR9715739 | Root | 3.296 |
| SRR9715742 | Root | 5.033 |
| SRR9715743 | Root | 4.239 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.313 |
| SRR8749028 | MeJA induced 9h | 6.401 |
| SRR8749029 | MeJA induced 9h | 7.561 |
| SRR8749030 | Uninduced | 2.236 |
| SRR8749031 | Uninduced | 1.606 |
| SRR8749032 | Uninduced | 4.112 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.503 |
| SRR8400027 | Control - Root | 3.495 |