Gene detail

Gene detail information of Glyur000580s00024199

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G23790.1	2.00E-95	Protein of unknown function (DUF607)
NR	KHN42015.1	3.16E-179	Calcium uniporter protein, mitochondrial [Glycine soja]
Swissprot	tr\|O64823\|MCU2_ARATH	4.00E-122	Calcium uniporter protein 2, mitochondrial (Precursor)
trEMBL	tr\|I1LHM4\|I1LHM4_SOYBN	2.00E-179	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G06800.1}

Sequence

Transcript Sequence

>Glyur000580s00024199.1
CAACACGTGTCCGGCCATCTATCCTTCTCCTTCTCCCTCTTTTGAATATTACAACTCAACCTCTTCATCCTCAATTTATCATCTCGCGGTTGCACGTTTTATTCAAATTCTCGCGTCTGTATCTTATCCTCCTATCCCTGTTCCATTTGTATGGGAGACCTATATATTTAGCTTCCCTCACCCATCCCTTTCTTCAAAGTNAAAAATTCCAGAGTTTTCTTCTGGTTTCTGATTTCTCTCTCTTTCTTCTGTGATTAATTAAATCATATCCATGGCGTTCAAGAAAACCCTTGCCCAACGCCTCTTAAACATCACCAGAATATCGTCGCAAACCACCACGAATTGCCGGATTTCATCGTCCTCTGTCCGCGGCGGGGCTTCACAGAGGGCCACCGAGCCTAACATTGCTCCGGATCCCGGAGAGAATGGACTCTTCCGGAGGTTCCTTCACAAGAGAACCGGGTTCCAACCGGAGCTCCGGTCNCCCCAGATCGCCGGAAACAACCTCGTCGAGAAGCTGAGGGCGATGGACATTGCCCGGAGCAGAATACGGTTGGAGGGGCTGAGACCGCCGGCGGCGGAGAAGCCCAGTGGAATGGAGGAAGGAGTGAGCGTCGAGGACGTGAGGAAGTTGCTGAAGGTGGCGCAGGTGGAGTTGGTGAAAGCGAGGCTGAGGGAGACACCGAAGAGTTGCATACACGTTTCGGAGTTCATTCGGATCTGCTCCGAGTATTGTTCGGATCACGATCAAGCCGTTAAGATTGCGAAGATGCTCGATGATTCTGCGGCTGTGATTGTTTTGGGAGATGTCGTGTTTCTCAGGCCCGAACAGGTAGCAAAAGCCATCCAAGGACTACTCCCTGTACCAGGAGCCAAGGTGCACGACTCANTAAGAAAAGAATTTGAGGAGATGGAGAAAAAGAAGTTGGCCATTGACAACAAAGCTGACACCTTAGTTCGCCGTGAGCTATGGGGTGGATTGGGTTTCCTAATGGTGCAAACAATGGCATTCATGAGGCTCACCTTTTGGGAGCTAACTTGGGATGTGATGGAACCCATATGCTTCTATTTAACATCCATGTACTTCATGGCTGGCTACACATTCTTCCTCAGGACCTCAAAAGAACCTTCCTTTGAAGGTTTCTACCAAGCCCGTTTCAGTTCCAAGCAGAAGCGCCTCATGAAGCTTCACAATTTTGACATTGAAAGGTACAAAGAGCTCAGGGCTGCGTGCTCTCTCACCATGCCTCCAAAGCTTGATTCATCATCCATTGCTCTCCCATTTGATAATTCTTCCCAACATCATCATTGATATGGAAGGTAATTGGAAGAAAATGAAAAAATAAAGATGTGGAAGGTCCCCTCAGCAACATTCATATTCATTGACTGTAGAATACAGCAAATTGATGACCCCCTTAAGCAGCAATTTTTTGGGGTTAATAAGAACCCCTCCTCCGTTTTAAGCTTACCGAAAGCCATAGGAAAAAGTCACTAAGATATATGCCAACGGTGTTAGAATTAGATGCGGCTTTATGTAGATCGAATGCAGAGTGTTCTTTCCATTTTTCCTTTTCTTTTTTTTGATACAATTCTTTACAATTTTCCTTTATCAAATGTCACATAAATACATTACATTTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00580	26720	29308	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000580s00024199.1	PF04678.8	DUF607	155	317	1.70E-52

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.497
SRR1783600	control	14.389
SRR1783602	moderate drought stress	16.473
SRR1811619	moderate drought stress	16.546

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	44.485
DRR006520	Root Summer glycyrrhizin high producing strain	44.273
DRR006521	Root Winter glycyrrhizin high producing strain	1.152
DRR006522	Root Winter glycyrrhizin high producing strain	1.031
DRR006523	Root Summer glycyrrhizin low producing strain	14.630
DRR006524	Root Summer glycyrrhizin low producing strain	14.654
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.928
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.937

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.408
SRR2868004	Drought Stress (root)	44.521
SRR2967015	Control (root)	38.444

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	25.206
SRR9715740	Leaf	8.193
SRR9715741	Leaf	11.105
SRR9715739	Root	15.074
SRR9715742	Root	18.368
SRR9715743	Root	17.501

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	59.133
SRR8749028	MeJA induced 9h	56.637
SRR8749029	MeJA induced 9h	27.176
SRR8749030	Uninduced	54.825
SRR8749031	Uninduced	182.662
SRR8749032	Uninduced	45.240

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.862
SRR8400027	Control - Root	4.297