Gene detail

Gene detail information of Glyur000580s00024197

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G36810.1	3.00E-119	geranylgeranyl pyrophosphate synthase 1
NR	XP_003537515.2	0	PREDICTED: geranylgeranyl pyrophosphate synthase, chloroplastic-like [Glycine max]
COG	YP_007133900.1	2.00E-124	Farnesyltranstransferase [Stanieria cyanosphaera PCC 7437]
Swissprot	tr\|Q94ID7\|GGPPS_HEVBR	2.00E-180	Geranylgeranyl pyrophosphate synthase, chloroplastic (Precursor)
trEMBL	tr\|I1LHM6\|I1LHM6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G06820.1}

Sequence

Transcript Sequence

>Glyur000580s00024197.1
ATGATGAGTTCAGTGAATATTGGTACATGGGTTCGTCCCAGTTGTACCTTGAACCAAACAATCATTCCCAAACACCACCCAACTCTCATTCCTTTCTCTCTTCCCATTTTCTCAGTCACCCCAAGAAAACTAATCTCTTCTTTTCCCTCTCTCACAGTCTCTGCGGTTCTCACTAATGTAGACACAGTAACAGAGGAAGAAGAAAAAGAAGCCGAAAAGACCATATTACCCAGCTTCAATTTCAAGGCCTATACGCTGGAAAAGGCCAACACAGTGAACCAAGCCTTGGACGCATCGATTGAGATGAAGGAACCGGAGAAGATCCACGAGGCGATGCGNTACTCCCTCCTCGCCGGCGGGAAACGGGTCCGGCCGGTACTCTGCATCGCCGCGTGCGAGCTCGTCGGCGGCAAAGAGGAAACGGCGATCCCCTCGGCGTGCGCCGTCGAGATGATCCACACCATGTCGCTNATTCACGACGACCTTCCATGCATGGACAACGACGACCTCCGCCGCGGGAAGCCGACGAGCCACAAGGTCTACGGCGAGGACGTGGCNGTCCTCGCCGGCGACGCACTTCTCGCGTTCGCGTTCGAGCACGTCGCCGTTTCGACCAAGGGGGTGTCGCCGGAGAGGGTGGTTCGAGCAATTGCTGAGCTGGCAAAATCNATCGGCGGCGAAGGACTNGTGGCGGGTCAGGTTGTTGATTTGGAATCGGAAGGGTTGTCCGATGTGGGACTCGAGAGGCTCGAGTTCATTCACCTTCGGAAAACCGCGGCATTGTTGGAGGCTGCGGTTGTGATGGGAGCAATTGTGGGTGGTGGGTCGGAGGAAGAAATTGAAAGACTGAGGAAGTATGCGAGGTGCATTGGGTTGTTGTTTCAGGTTGTGGATGATATTCTTGATGTTACNAAGTCTTCCGAGGAATTGGGGAAGACAGCGGGGAAGGATTTGGTGGCTGATAAGGTCACATACCCCAAGCTTTTGGGGATTGAAAAATCTAAGGAGTTTATTGCACAATTGAACAAGGATGCACTTGACCACCTCCAAGGTTTCGATCCGGAAAAGGTGGCTCCATTGTTTGCTTTAACCAATTACATTGCTTACAGGCAAAAATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00580	13948	15066	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13789	GGPS	EC:2.5.1.1 2.5.1.10 2.5.1.29	Terpenoid backbone biosynthesis	map00900

Gene Ontology

biological_process
GO:0008299 isoprenoid biosynthetic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000580s00024197.1	PF00348.12	polyprenyl_synt	109	358	4.80E-86

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.505
SRR1783600	control	0.538
SRR1783602	moderate drought stress	0.686
SRR1811619	moderate drought stress	0.707

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.194
DRR006520	Root Summer glycyrrhizin high producing strain	0.192
DRR006521	Root Winter glycyrrhizin high producing strain	0.762
DRR006522	Root Winter glycyrrhizin high producing strain	0.485
DRR006523	Root Summer glycyrrhizin low producing strain	0.099
DRR006524	Root Summer glycyrrhizin low producing strain	0.099
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.703
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.705

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.783
SRR2868004	Drought Stress (root)	31.169
SRR2967015	Control (root)	15.659

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	33.740
SRR9715740	Leaf	18.942
SRR9715741	Leaf	28.763
SRR9715739	Root	1.776
SRR9715742	Root	1.248
SRR9715743	Root	1.204

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.063
SRR8749028	MeJA induced 9h	0.060
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.002
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.317
SRR8400027	Control - Root	3.450