Gene detail

Gene detail information of Glyur000579s00034292

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G27290.1	4.00E-55	S-locus lectin protein kinase family protein
NR	KEH19635.1	2.92E-175	S-locus lectin kinase family protein [Medicago truncatula]
Swissprot	tr\|O81832\|Y4729_ARATH	1.00E-86	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (Precursor)
trEMBL	tr\|A0A072U1F1\|A0A072U1F1_MEDTR	1.00E-175	Serine/threonine-protein kinase {ECO:0000256\|PIRNR:PIRNR000641}

Sequence

Transcript Sequence

>Glyur000579s00034292.1
ATGCTTGGCAGCATCANAGTGTTAATTCTTTTGTTCTTTTCACTCTCCTACACGAGAACAACGACAAGCACTTCACTGGACAGTTTATCTATGAATCAATCCATCCGAGATGGCCAGAGTTTAGTTTCGGCACGTGGAACCTTCGAATTGGGTTTCTTCAGCCCCGGAAACTCAACGGGTCGATATTTGGGTATGTGGTACAGAAACTTAACCCCCTTAACGGTGGTGTGGGTAGCCAACAGGGAAACACCACTCCGTAANAATNCAGGAGTCTTGAAACTCAACGAGAACGGGGTTCTCGTGATTCTCAACGGCAACAACAATAACGACACCGTTTGGTTGTCGTCCAACAAAGCAGTGAAGAATAATGATCCAGCTAAGGGGGACTATTCTGTAAATATTGACATTAGAGGGTATCCCCAATTAGTTATTGTGAAAGGTTCTATGATAAGAAATAGAATCGGCGTATGGAATGGGCGTGGTTTCACTGGGTACCCAACACAACCACTGAAACAAAAACAGAAGTTTAATTTTGTCGTGAATGATAGAGAAGTGTATCATCAATATACAGTCACTGATAGCTCCGTTGTTTCGATATACAAACTTTCTCCTTCGGGAAACTTAGAGGGTCTGGCTTGGACGAGTCCGAAAAGCNGTAGGATAGTTATCAACACCGGGGGAGAAGATTCGTGTGATGATTACGCAATGTGTGGTGCGAATTCCATTTGCAGCATGAATGGCAACGTTCCGAACTGTGAGTGCCTGAAAGGGTATGTTCCTAAGTTCCCTGAACAATGGAACATATCGTACTGGTCTAGCGGTTGTGCTCCAAGGAATGGATATGTTTGTGGGAAAAATAACACTGGTGGGTTCTTGAGGTACAAAGAAATGAAATTGCCAGACACGGCTTCGTCATGGTATAATAAGACCATGAGCCTTGCNGAATGTGAAAGGGAATGTATGGAGAACTGTTCGTGTACGGCATATACGAATTTGGATATCCGTGGTGGAGGAAGTGGGTGTCTACTTTGGTCTGGTGATCTTGTTGACATGAGGAAATTCTCTCAATGGGGACAAGAGCTTTATATCAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00579	67814	69238	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0048544 recognition of pollen

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000579s00034292.1	PF01453.19	B_lectin	73	122	4.00E-08
Glyur000579s00034292.1	PF00954.15	S_locus_glycop	153	261	1.00E-23
Glyur000579s00034292.1	PF08276.6	PAN_2	283	351	8.30E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.520
SRR1783600	control	0.644
SRR1783602	moderate drought stress	0.711
SRR1811619	moderate drought stress	0.775

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.406
DRR006520	Root Summer glycyrrhizin high producing strain	1.634
DRR006521	Root Winter glycyrrhizin high producing strain	0.728
DRR006522	Root Winter glycyrrhizin high producing strain	0.640
DRR006523	Root Summer glycyrrhizin low producing strain	1.111
DRR006524	Root Summer glycyrrhizin low producing strain	1.007
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.852
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.269

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.446
SRR2868004	Drought Stress (root)	10.448
SRR2967015	Control (root)	8.513

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.347
SRR9715740	Leaf	4.637
SRR9715741	Leaf	10.432
SRR9715739	Root	0.059
SRR9715742	Root	1.666
SRR9715743	Root	1.277

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.423
SRR8749028	MeJA induced 9h	2.888
SRR8749029	MeJA induced 9h	0.472
SRR8749030	Uninduced	3.599
SRR8749031	Uninduced	4.991
SRR8749032	Uninduced	1.239

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.082
SRR8400027	Control - Root	3.559