Gene detail information of Glyur000578s00021014 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G34540.1 | 2.00E-111 | NmrA-like negative transcriptional regulator family protein |
| NR | XP_003606937.1 | 0 | Isoflavone reductase-like protein [Medicago truncatula] |
| COG | YP_003886292.1 | 1.00E-05 | NmrA family protein [Cyanothece sp. PCC 7822] |
| Swissprot | tr|O65679|PILR3_ARATH | 9.00E-139 | Probable pinoresinol-lariciresinol reductase 3 |
| trEMBL | tr|G7JHC4|G7JHC4_MEDTR | 0 | Phenylcoumaran benzylic ether reductase-like protein {ECO:0000313|EMBL:AES89134.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00578 | 115349 | 117566 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000578s00021014.1 | PF05368.8 | NmrA | 1 | 232 | 1.40E-70 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.359 |
| SRR1783600 | control | 7.041 |
| SRR1783602 | moderate drought stress | 3.523 |
| SRR1811619 | moderate drought stress | 3.199 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.541 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.633 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.683 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.674 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.889 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.214 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.695 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.572 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.977 |
| SRR2868004 | Drought Stress (root) | 2.114 |
| SRR2967015 | Control (root) | 2.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.009 |
| SRR9715740 | Leaf | 16.192 |
| SRR9715741 | Leaf | 6.227 |
| SRR9715739 | Root | 3.667 |
| SRR9715742 | Root | 1.772 |
| SRR9715743 | Root | 3.274 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 25.430 |
| SRR8749028 | MeJA induced 9h | 11.035 |
| SRR8749029 | MeJA induced 9h | 16.041 |
| SRR8749030 | Uninduced | 5.289 |
| SRR8749031 | Uninduced | 2.899 |
| SRR8749032 | Uninduced | 8.006 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.898 |
| SRR8400027 | Control - Root | 6.083 |