Gene detail

Gene detail information of Glyur000578s00021013

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G39230.1	8.00E-95	NmrA-like negative transcriptional regulator family protein
NR	BAF34841.1	2.15E-138	pterocarpan reductase [Lotus japonicus]
COG	YP_007551190.1	2.00E-18	hypothetical protein AZKH_1901 [Azoarcus sp. KH32C]
Swissprot	tr\|E1U332\|ALL12_OLEEU	7.00E-110	Isoflavone reductase-like protein
trEMBL	tr\|Q05JY3\|Q05JY3_LOTJA	8.00E-139	Pterocarpan reductase {ECO:0000313\|EMBL:BAF34841.1}

Sequence

Transcript Sequence

>Glyur000578s00021013.1
GGACAATGTNCTTTCGACGATTCTCGAATCCGTTTGAACGTAATCAATCGATCCTTCAAATTCTAGCTAATATTGAAATGCATTTTCAAGAATTATGTTACATACGNCAACGACTCGGTGAACAGCTTCGGCATCAAAGCACCGATAGCCTAATTAATATAAAGAGGACAAAACAGAGCATATAACACTCCATCNTATAATTAAGTCCTTGAGTCATATTGATTTCTCGTTCGACGGAGATATATATNTTTTCCGATGGATTCAGCGGCGGCTTCAAAGATTCTGGTGATCGGAGGAACAGGGTACATGGGAAGGTTCTTGGTGGAAGCTAGTACGAAAGCTGGTCACCCCACTTTCGCACTCGTAAGACGCTCAACTGTTACCAATCCAGATAAGTCATCCATCATCCACAGCTTCAACACCTTGGGCGTCAACCTACTTTTGGGAGATATAAATGACCACCAGAGTTTGGTCAAGGCAATAAAGCAAGCGGACGTGGTAATCTCAACGGTGAATCACCAGTACNTATCTGATCAATATAAGATCATTTCCGCCATCAAAGAAGCAGGAAACATTAAGAGGTTCTTTCCTTCAGAATTTGGAATCGATGTGGATCGAACTCATGGAGTAGATGGGGCTAAGGCTTTGTTTGACATTAAGGCCAAATTCCGCAGAACAATTGAGGCTGAAGGAATTCCCCATACCTATGTGGTGGCCAACTTCCTCACCCAACACTTCCTACCAACTCGGTCACGTCTTCTTGCCATAGCTGCCCCATTAGATAAAGTTGTTATCCTTGGGGATGGAAATATCAAAGCTACTTTTAATACGGAAGAGGGTGTTGCTACTTTCACCATCAGAGCTGTTGATGATCCAAGAACCNTGAACAAAATTCTCTACATCAGACCCCCTGCAAATACCTTGTCATATAATGACCTAGTATCTCTATGGGAGAAGAAGACTGGNAACACTCTTGAAAGAGTCTATGTTCCAGAGGAGCAAAGTCCTCGTACCCCTTGAATATGGCCCTGTCAATTTGTCACGCCGCGTATGTGAAGGGNGATNACACTAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00578	109613	113956	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000578s00021013.1	PF05368.8	NmrA	9	239	2.00E-75

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	215.182
SRR1783600	control	211.930
SRR1783602	moderate drought stress	138.994
SRR1811619	moderate drought stress	137.308

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.214
DRR006520	Root Summer glycyrrhizin high producing strain	8.629
DRR006521	Root Winter glycyrrhizin high producing strain	12.734
DRR006522	Root Winter glycyrrhizin high producing strain	12.273
DRR006523	Root Summer glycyrrhizin low producing strain	10.248
DRR006524	Root Summer glycyrrhizin low producing strain	10.477
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.714
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.701

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	46.093
SRR2868004	Drought Stress (root)	106.909
SRR2967015	Control (root)	75.353

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.414
SRR9715740	Leaf	0.336
SRR9715741	Leaf	1.777
SRR9715739	Root	168.744
SRR9715742	Root	102.666
SRR9715743	Root	108.494

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.268
SRR8749028	MeJA induced 9h	8.885
SRR8749029	MeJA induced 9h	4.807
SRR8749030	Uninduced	10.493
SRR8749031	Uninduced	23.923
SRR8749032	Uninduced	19.031

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	219.607
SRR8400027	Control - Root	191.804